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docs: add verified ORCIDs and a factual abstract to CITATION.cff - #207
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Adds ORCID fields for Gwênlyn Glusman (0000-0001-8060-5955) and Jared C. Roach (0000-0003-4524-0107), both verified against the ORCID public registry with matching Institute for Systems Biology affiliation. Skye Lane Goetz is left without an ORCID: the closest registry record (0009-0007-8373-2352) could not be conclusively matched. Replaces the unverifiable 'highly performant' abstract claim with the mechanism it abbreviates: a Rust mapping extension with parallel, memory-capped builds, as documented in docs/fullmap.md and docs/cli.md. Co-authored-by: Gwenlyn Glusman <3977332+gglusman@users.noreply.github.com>
SkyeAv
added this pull request to stack #208
September 30, 2026 20:05
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Cut 19.5.1 and bump the package version in pyproject.toml, CITATION.cff, and uv.lock. Patch: docs-only surface refresh plus a behavior-preserving dependency bump. biolink-model 4.4.5 absorbs the dropped CLASS_FIELD_OVERRIDES grants upstream (the effective field set on the pinned EntityToDiseaseAssociation / EntityToPhenotypicFeatureAssociation classes is unchanged) and the Rust layer passes validation_ctx by value to satisfy Rust 1.99's needless_borrows_for_generic_args lint (#209). Documentation gains a statement of need and audience, a Getting help pathway, experimental labels on the agent/optimize/distill surfaces, runnable fullmap prerequisites in the tutorial, a three-method installation guide, and plain-ASCII prose (#205); CODE_OF_CONDUCT.md ships Contributor Covenant 2.1 with CITATION.cff maintainer emails as enforcement contacts (#206); CITATION.cff gains verified ORCIDs for all three authors and a factual abstract (#207). Changelog: - Versioned the release as 19.5.1 dated 2026-10-01; added Changed entries for #205, #206, #207, and #209 with PR links. Docs: none needed here; the release changelog section is the docs update. Testing: - make check -> exit 0: ruff check/format clean, pyright clean, pytest 1674 passed / 52 skipped in 29.33s, cargo test 156 passed / 0 failed (127 + 11 + 17 + 1 across 5 suites), cargo clippy -D warnings clean
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Two
CITATION.cffaccuracy problems: three authors with no ORCIDs, and an abstract claim ("highly performant") no benchmark in the repo backs. Fixes both; ORCIDs matter for citation metadata harvesting and journal submission.ORCIDs
0009-0007-8373-2352, the closest registry record ("Skye Goetz", Cal Poly + ISB), confirmed as hers and verified against the ORCID public registry.0000-0001-8060-5955, verified against the ORCID public registry (name matches exactly; affiliation list includes Institute for Systems Biology).0000-0003-4524-0107, verified against the registry (Institute for Systems Biology).Abstract
docs/fullmap.mdanddocs/cli.md(worker capmin(available_CPUs, MemAvailable_GB / 2)); the original was not.Testing
uv run python -cYAML parse ofCITATION.cff->cff ok, 3 authors(cff-version 1.2.0 intact, all three ORCID URL formats asserted)uv run pytest -q --no-cov tests/test_docs_source_of_truth.py->201 passed(no guard bindsCITATION.cff, confirmed by search)pub.orcid.org/v3.0/expanded-searchand/personAPI responses cited aboveCo-authored-by: Gwenlyn Glusman 3977332+gglusman@users.noreply.github.com
cc @gglusman