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[7/11] Calculate cloning sequences and explicit domestication proposals - #8

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marpaia/cloning-sequences

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@marpaia

@marpaia marpaia commented Oct 1, 2026 •

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Adds DNA digestion and ligation calculations, prospective sequence derivation, and explicit domestication proposals. Calculated sequences retain their computational provenance and do not assert an observed laboratory result.

Validation: 212 tests passed on Python 3.12 with the optional robot SDKs installed; Ruff and mypy passed at this branch tip.

Stack: 7/11, split from #1. Base: marpaia/cloning-recipes. Each PR targets the preceding branch so its diff contains only this slice.

Previous: #7 | Next: #9

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