Issues

• Enhancement: Enable nextstrain run

  enhancement
  nextstrain/lassa#74 · Filter by author j23414 opened on Oct 3, 2025

• Nextclade: Add lineage 6 representative sequences to S and L nextclade datasets

  enhancement
  nextstrain/lassa#71 · Filter by author j23414 opened on Oct 3, 2025

• Revisit Lassa Nextclade alignment results

  bug
  nextstrain/lassa#55 · Filter by author j23414 opened on Mar 4, 2025

• Enhancement: Consider rooting on an outgroup

  enhancement
  nextstrain/lassa#53 · Filter by author j23414 opened on Feb 27, 2025

• Properly handle CSV-like TSVs

  nextstrain/lassa#49 · Filter by author joverlee521 opened on Dec 6, 2024

• Add Nextclade dataset(s)

  enhancement
  nextstrain/lassa#48 · Filter by author j23414 opened on Nov 29, 2024
  2

  

• Document the reasons that the reference is Josiah NC_004296 and NC_004297

  enhancement
  nextstrain/lassa#43 · Filter by author j23414 opened on Nov 22, 2024
  2

• Dynamically generate segment reference files

  enhancement
  nextstrain/lassa#30 · Filter by author j23414 opened on Aug 15, 2024

• Deal with duplicate strain names

  enhancement
  nextstrain/lassa#16 · Filter by author j23414 opened on Aug 2, 2024