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Naturalis Biodiversity Center

37 followers
Leiden, the Netherlands
https://www.naturalis.nl

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barcode-constrained-phylogeny barcode-constrained-phylogeny Public

Pipeline for building topologically-constrained phylogenies from DNA barcode data

Python 2 3

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Showing 10 of 189 repositories

timegraft Public
Dated barcode trees for phylogenetic diversity: per-genus subtrees from BOLD or UNITE, grafted onto a dated OToL/TimeTree backbone

naturalis/timegraft's past year of commit activity

Python 0 Apache-2.0 0 12 0 Updated Nov 6, 2026
sdmdl Public
Species Distribution Modelling using Deep Learning

naturalis/sdmdl's past year of commit activity

Python 31 MIT 13 4 19 Updated Nov 4, 2026
BeeGees Public Forked from bge-barcoding/BeeGees
Snakemake workflow for recovering barcode sequences from genome skim data generated from museum (hDNA) specimens.

naturalis/BeeGees's past year of commit activity

Python 0 MIT 4 0 0 Updated Oct 29, 2026
BIP Public Forked from cbg-innov/BIP
Barcode Inference Pipeline

naturalis/BIP's past year of commit activity

Shell 0 3 0 0 Updated Oct 23, 2026
galaxy-tool-manage-zip Public
Manage zip tool for galaxy (transferred from old galaxy)

naturalis/galaxy-tool-manage-zip's past year of commit activity

Shell 0 0 0 0 Updated Oct 9, 2026
galaxy-tool-lca Public

naturalis/galaxy-tool-lca's past year of commit activity

Python 3 3 1 1 Updated Oct 6, 2026
galaxy-tool-BLAST Public
A new tool and wrapper for the identification with blastn

naturalis/galaxy-tool-BLAST's past year of commit activity

Python 0 2 2 1 Updated Oct 5, 2026
galaxy-tool-edentity-metabarcoding-pipeline Public

naturalis/galaxy-tool-edentity-metabarcoding-pipeline's past year of commit activity

Python 1 Apache-2.0 0 1 1 Updated Oct 1, 2026
galaxy-tool-prinseq-sequence-analysis Public
transferred from old galaxy

naturalis/galaxy-tool-prinseq-sequence-analysis's past year of commit activity

Shell 0 0 0 0 Updated Oct 1, 2026
DWCAConfig Public
DWCA Configuratie bestanden om data te downloaden uit ES (NBA)

naturalis/DWCAConfig's past year of commit activity

Shell 1 2 1 0 Updated Sep 30, 2026

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