Issues

• Massive drop on read length - over 70%

  mortazavilab/TranscriptClean#44 · Filter by author AlexFryd opened on May 12, 2025

• Significant Read Reduction in Specific Samples After Running TranscriptClean

  mortazavilab/TranscriptClean#43 · Filter by author tabatakenshiro opened on Mar 13, 2025
  1

• Not working properly for PacBio MAS-Iso-Seq Data

  mortazavilab/TranscriptClean#42 · Filter by author mbroad1 opened on Jan 27, 2025

• No splice donors or acceptors found on chromosomes:

  mortazavilab/TranscriptClean#41 · Filter by author MustafaElshani opened on Nov 4, 2024

• Terminated following "KeyboardInterrupt"

  mortazavilab/TranscriptClean#40 · Filter by author sbresnahan opened on Oct 9, 2024

• warning message: "Problem encountered while correcting transcript " single positional indexer is out-of-bounds

  mortazavilab/TranscriptClean#38 · Filter by author criphg opened on May 2, 2023
  3

• invalid literal for int() with base 10: '1307=1' and UserWarning: Problem parsing transcript with ID 'transcript/10670'

  mortazavilab/TranscriptClean#28 · Filter by author philge opened on Mar 10, 2022
  3

• list index out of range

  mortazavilab/TranscriptClean#27 · Filter by author NiklasDreyer opened on Nov 26, 2021

• generate_report.R have noused argument

  mortazavilab/TranscriptClean#26 · Filter by author gongjingtang opened on Jul 26, 2021

• Is there a strong repair mode？

  mortazavilab/TranscriptClean#22 · Filter by author Trandamere opened on Jul 19, 2020
  1

• No such file or directory

  mortazavilab/TranscriptClean#19 · Filter by author number-25 opened on Feb 5, 2020
  4

• CIGAR operations out of range after splice junction correction

  mortazavilab/TranscriptClean#16 · Filter by author msto opened on Sep 27, 2019
  5

• Quality scores lost

  mortazavilab/TranscriptClean#12 · Filter by author laurenfitch opened on Jun 20, 2019
  2

• Incompatible with CIGAR operators X/=

  mortazavilab/TranscriptClean#10 · Filter by author pdishuck opened on Apr 12, 2019
  3