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feature/SOF-8075 Feature: tutorial for SrTiO3(011) and (001) surface energies, Table VII - #416

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feature/SOF-8075
Oct 26, 2026
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feature/SOF-8075

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@VsevolodX VsevolodX commented Oct 9, 2026 •

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Adds the tutorial page for the SrTiO3 surface energies notebook (P-2D-SLB-S), reproducing Table VII of Eglitis & Vanderbilt (2008), with its nav entries in mkdocs.yml and mkdocs-guide.yml and links from the guide index table and the specific-examples overview, which said "Coming Soon". The structure page now describes the manuscript's FIG. 2 planes and the FIG. 3(d)-(f) and FIG. 1 slabs the notebook cuts and links the new page.

The page's results (section 5.4 and the comparison table in section 6) are those of the simulation notebook run against production with RELAX = True.

Review: ungrounded (precedent proxy exit 10).

SOF-8075. Notebooks: mat3ra/api-examples#386.

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Merging accepts anything unticked.

  • jupyterlite_embed points at the literal notebook filename in api-examples (specific_examples/slab_strontium_titanate_SIMULATION.ipynb).
  • Quoted cells match the notebook at the PR head.
  • Deploy preview: the guide index links the page and the page resolves (HTTP 200).
  • Deploy preview: the FIG. 2 image, the two Wave viewer snapshots and the bibliography render.

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…ion run); structure page cites Fig. 3 and drops the hafnia reference

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
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VsevolodX and others added 6 commits October 9, 2026 09:14
…x and the specific-examples overview

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
…06 citation

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
…er orientation, sign of the relaxation deviation

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
@VsevolodX VsevolodX changed the title feature/SOF-8075 Feature: tutorial for SrTiO3(011) and (001) surface energies, Table VII [WIP] feature/SOF-8075 Feature: tutorial for SrTiO3(011) and (001) surface energies, Table VII Oct 9, 2026
VsevolodX and others added 8 commits October 9, 2026 21:15
…roduced

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
…rison

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
… slabs

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
…hing else

The 5.4 block is the notebook's new output, without percent, sum or order line; the
deviation-sign sentence and the 6 paragraph go; step 9 and the 5.4 intro follow; the
section 4 sentence ends at "no PBE surface energies."; 8.2 No cluster available as in the GaN
page; line 31 gets a main verb.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
… section 3; the paper does not state it

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
The last cell prints, per termination, the computed cleavage energy beside the manuscript's and, with `RELAX = True`, the relaxation and surface energies:

```
Ours: pbe-us 40-200Ry k6.5, relaxed; paper: B3PW. Energies in eV.

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paper -> reference or manuscript or Eglitis et al

…d results and the section 6 table

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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VsevolodX merged commit 618d5ee into main Oct 26, 2026
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VsevolodX deleted the feature/SOF-8075 branch October 26, 2026 23:27
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