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Failure to run the interactive mode of ModDotPlot v.0.9.9 #59

Description

@Wangeos

Hi Alex,

Thanks for developing the tool!

I am trying to run the interactive mode of ModDotPlot v.0.9.9 on a single chromosome using the following command:

moddotplot interactive -f /home/user/reference/chr1.fa

But I have got the following error using ModDotPlot built from the GitHub repo:


| / | | | | __ \ | | | __ | | | |
| \ / | ___ | | | | | | ___ | | | |) | | ___ | |_
| |/| |/ _ \ / ` | | | | |/ _ | _| | /| |/ _ | __|
| | | | (
) | (
| | | |
| | (
) | |_ | | | | () | |
|| ||_
/ _,| |/ _/ _| || |_|_/ __|

v0.9.9

Running ModDotPlot in interactive mode

Traceback (most recent call last):
File "/home/user/software/ModDotPlot/ModDotPlot/venv/bin/moddotplot", line 5, in
from moddotplot.main import main
File "/home/user/software/ModDotPlot/ModDotPlot/venv/lib/python3.11/site-packages/moddotplot/main.py", line 11, in
sys.exit(main())
^^^^^^
File "/home/user/software/ModDotPlot/ModDotPlot/venv/lib/python3.11/site-packages/moddotplot/moddotplot.py", line 650, in main
if args.forward:
^^^^^^^^^^^^
AttributeError: 'Namespace' object has no attribute 'forward'

I have tried ModDotPlot v.0.9.9 installed using pip as well, but got the same error. Either running it on WSL or a Ubuntu server produce the same error as well.

However, this code can be run under ModDotPlot v.0.9.8 without any issues.

Are there any solutions on this?

Best regards

Activity

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