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chromR_object_files/
figure-html
chromR_object_files/
figure-html
depth_plot_files/
figure-html
depth_plot_files/
figure-html
determining_ploidy_1_files/
figure-html
determining_ploidy_1_files/
figure-html
determining_ploidy_2_files/
figure-html
determining_ploidy_2_files/
figure-html
dnabin_files/
figure-html
dnabin_files/
figure-html
filtering_data_files/
figure-html
filtering_data_files/
figure-html
genetic_differentiation_files/
figure-html
genetic_differentiation_files/
figure-html
how_much_memory_files/
figure-html
how_much_memory_files/
figure-html
missing_data_files/
figure-html
missing_data_files/
figure-html
omitting_data_files/
figure-html
omitting_data_files/
figure-html
quality_filtering_files/
figure-html
quality_filtering_files/
figure-html
quick_intro_files/
figure-html
quick_intro_files/
figure-html
ranking_data_files/
figure-html
ranking_data_files/
figure-html
sequence_coverage_files/
figure-html
sequence_coverage_files/
figure-html
site_libs
site_libs
vcf_data_files/
figure-html
vcf_data_files/
figure-html
visualization_1_files/
figure-html
visualization_1_files/
figure-html
visualization_2_files/
figure-html
visualization_2_files/
figure-html
.gitignore
.gitignore
Makefile
Makefile
README.html
README.html
README.md
README.md
Supercontig_1.10.vcf.gz
Supercontig_1.10.vcf.gz
Supercontig_1.5.vcf.gz
Supercontig_1.5.vcf.gz
Supercontig_1.50.vcf.gz
Supercontig_1.50.vcf.gz
TASSEL_GBS0077.vcf.gz
TASSEL_GBS0077.vcf.gz
_site.yml
_site.yml
apply.Rmd
apply.Rmd
apply.html
apply.html
censoring_data.Rmd
censoring_data.Rmd
censoring_data.html
censoring_data.html
chromR_object.Rmd
chromR_object.Rmd
chromR_object.html
chromR_object.html
compiling_vcfR.Rmd
compiling_vcfR.Rmd
compiling_vcfR.html
compiling_vcfR.html
depth_plot.Rmd
depth_plot.Rmd
depth_plot.html
depth_plot.html
determining_ploidy_1.Rmd
determining_ploidy_1.Rmd
determining_ploidy_1.html
determining_ploidy_1.html
determining_ploidy_2.Rmd
determining_ploidy_2.Rmd
determining_ploidy_2.html
determining_ploidy_2.html
dip_to_hap.Rmd
dip_to_hap.Rmd
dip_to_hap.html
dip_to_hap.html
dnabin.Rmd
dnabin.Rmd
dnabin.html
dnabin.html
export.Rmd
export.Rmd
export.html
export.html
export_genind_genclone.Rmd
export_genind_genclone.Rmd
export_genind_genclone.html
export_genind_genclone.html
export_genlight_snpclone.Rmd
export_genlight_snpclone.Rmd
export_genlight_snpclone.html
export_genlight_snpclone.html
export_vcfgz.Rmd
export_vcfgz.Rmd
export_vcfgz.html
export_vcfgz.html
extract_data.Rmd
extract_data.Rmd
extract_data.html
extract_data.html
filtering_data.Rmd
filtering_data.Rmd
filtering_data.html
filtering_data.html
footer.html
footer.html
gbs_class.Rmd
gbs_class.Rmd
gbs_class.html
gbs_class.html
genetic_differentiation.Rmd
genetic_differentiation.Rmd
genetic_differentiation.html
genetic_differentiation.html
googlecode.html
googlecode.html
header.html
header.html
how_much_memory.Rmd
how_much_memory.Rmd
how_much_memory.html
how_much_memory.html
index.Rmd
index.Rmd
index.html
index.html
matrices.Rmd
matrices.Rmd
matrices.html
matrices.html
missing_data.Rmd
missing_data.Rmd
missing_data.html
missing_data.html
omitting_data.Rmd
omitting_data.Rmd
omitting_data.html
omitting_data.html
pinf_ref_vars.csv
pinf_ref_vars.csv
pinf_ref_wins.csv
pinf_ref_wins.csv
ploidy.Rmd
ploidy.Rmd
ploidy.html
ploidy.html
quality_filtering.Rmd
quality_filtering.Rmd
quality_filtering.html
quality_filtering.html
quick_intro.Rmd
quick_intro.Rmd
quick_intro.html
quick_intro.html
ranking_data.Rmd
ranking_data.Rmd
ranking_data.html
ranking_data.html
reporting_issue.Rmd
reporting_issue.Rmd
reporting_issue.html
reporting_issue.html
rlanguage.Rmd
rlanguage.Rmd
rlanguage.html
rlanguage.html
sequence_coverage.Rmd
sequence_coverage.Rmd
sequence_coverage.html
sequence_coverage.html
styles.css
styles.css
subset_data_to_1chrom.Rmd
subset_data_to_1chrom.Rmd
subset_data_to_1chrom.html
subset_data_to_1chrom.html
tidy_vcfR.Rmd
tidy_vcfR.Rmd
tidy_vcfR.html
tidy_vcfR.html
vcfR_documentation.Rproj
vcfR_documentation.Rproj
vcfR_documentation.bib
vcfR_documentation.bib
vcfR_object.Rmd
vcfR_object.Rmd
vcfR_object.html
vcfR_object.html
vcf_data.Rmd
vcf_data.Rmd
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