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@fraenkel-lab

The Fraenkel Lab at MIT

We are developing computational and experimental approaches to search for new therapeutic strategies for diseases.

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  1. OmicsIntegrator OmicsIntegrator Public archive

    This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.

    Python 31 21

  2. pcst_fast pcst_fast Public

    A fast implementation of the Goemans-Williamson scheme for the prize-collecting Steiner tree / forest problem.

    C++ 69 22

  3. GSLR GSLR Public

    An algorithm for classification from a graph-sparse support

    Jupyter Notebook 15 4

Repositories

Showing 10 of 18 repositories
  • PIUMet Public
    fraenkel-lab/PIUMet's past year of commit activity
    Python 0 2 0 0 Updated Sep 4, 2026
  • tdp43-multiomic-network Public

    Multi-omic and network analysis of TDP-43 KD iNeuron data.

    fraenkel-lab/tdp43-multiomic-network's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Oct 17, 2025
  • neurodegeneration-network Public

    scripts used to generate the analysis and figures in the manuscript An integrative systems-biology approach defines mechanisms of Alzheimer’s disease neurodegeneration, Leventhal et al.

    fraenkel-lab/neurodegeneration-network's past year of commit activity
    HTML 0 1 0 0 Updated Aug 27, 2025
  • pcst_fast Public

    A fast implementation of the Goemans-Williamson scheme for the prize-collecting Steiner tree / forest problem.

    fraenkel-lab/pcst_fast's past year of commit activity
    C++ 69 MIT 22 7 2 Updated Oct 17, 2024
  • OmicsIntegrator2 Public

    Prize-Collecting Steiner Forests for Interactomes

    fraenkel-lab/OmicsIntegrator2's past year of commit activity
    Jupyter Notebook 65 BSD-3-Clause 21 13 3 Updated Jun 18, 2024
  • image-preprocessing Public
    fraenkel-lab/image-preprocessing's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jun 11, 2024
  • shh-mben Public
    fraenkel-lab/shh-mben's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 5, 2023
  • imaging-resources Public
    fraenkel-lab/imaging-resources's past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Nov 10, 2023
  • mogp Public

    Mixture of Gaussian Processes Model for Sparse Longitudinal Data

    fraenkel-lab/mogp's past year of commit activity
    Jupyter Notebook 38 BSD-3-Clause 5 1 1 Updated Dec 6, 2022
  • GarNet Public
    fraenkel-lab/GarNet's past year of commit activity
    HTML 4 2 6 2 Updated Jun 21, 2022
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