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1. popgenVCF popgenVCF Public

   Reproducible R toolkit and CLI for population-genomic analysis of VCF data: QC, PCA, kinship, ROH, FST, DAPC, AMOVA, ADMIXTURE, and more

   R

2. primer-finder primer-finder Public

   Find group-specific kmers in assembled genomes to design selective (q)PCR assays

   Python 6 2

3. BACoN BACoN Public

   BACoN stands for "Bait, Assemble and Compare Nanopore".

   Python 2 2

4. QIIME2_ITS QIIME2_ITS Public

   QIIME2 pipeline for singe-end and paired-end sequencing data

   Python 2 4

5. genome_comparator genome_comparator Public

   Fast genome comparison with Mash, from assemblies or reads: distance matrix, UPGMA/NJ/ME trees with bootstrap support, and interactive PCoA

   Python 2 3

6. mashID mashID Public

   Species identification from genome assemblies or raw reads using Mash

   Python