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dsl: Add PETSc functionality - #2570

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ZoeLeibowitz wants to merge 115 commits into

mainfrom

petsc

Open

dsl: Add PETSc functionality#2570
ZoeLeibowitz wants to merge 115 commits into
mainfrom
petsc

Commits on Mar 24, 2025
- compiler: Add PETSc module
  ZoeLeibowitz
  committed
  f9d1e34
- Clean up
  ZoeLeibowitz
  committed
  5505a12
- compiler: Initialize and Finalize PETSc once and command line args
  ZoeLeibowitz
  committed
  f4ee1b9
- Coupled (#41)
  ZoeLeibowitz
  committed
  0af998d
- misc: Rebase fixes
  ZoeLeibowitz
  committed
  1146a07
- Fix sympy_dtype for expressions containing FieldFromPointer objects (#66)
  ZoeLeibowitz
  committed
  cccb988
Commits on Mar 26, 2025
- compiler: Add PETSc language and printer (#67)
  ZoeLeibowitz
  authored
  f61d4dd
Commits on Mar 31, 2025
Commits on Apr 2, 2025
- Compiler: Add basic initguess callback (#72)
  ZoeLeibowitz
  authored
  fb4b96f
- Staggered grids (#73)
  ZoeLeibowitz
  authored
  33b2896
- Drop unnecessary IndexedData check (#74)
  ZoeLeibowitz
  authored
  515046a
- Separate PETSc install into single image (#75)
  ZoeLeibowitz
  authored
  f1d7f0f
- Add some examples (#76)
  ZoeLeibowitz
  authored
  42e0e70
- Merge branch 'devitocodes:main' into master
  ZoeLeibowitz
  authored
  1e99432
Commits on Apr 3, 2025
- Merge branch 'devitocodes:main' into master
  ZoeLeibowitz
  authored
  bdade2c
- Use VecCreateMPIWithArray (#77)
  ZoeLeibowitz
  authored
  4f3bd88
- workflows: Edit petsc docker image
  ZoeLeibowitz
  committed
  9c60990
- workflows: Update petsc install to latest release
  ZoeLeibowitz
  committed
  a8f11a7
Commits on Apr 16, 2025
- logging: Corner case for PETSc
  JDBetteridge
  committed
  d06b275
Commits on Apr 17, 2025
- examples: Add 1D example
  ZoeLeibowitz
  committed
  2b6c038
- examples: Add 04_poisson example
  ZoeLeibowitz
  committed
  ab2450b
- workflows: Update workflow to run new tests
  ZoeLeibowitz
  committed
  dd73033
- misc: Flake 8
  ZoeLeibowitz
  committed
  d3e7be6
Commits on Apr 21, 2025
- misc: Fix conflict with main
  ZoeLeibowitz
  committed
  9f32c1a
- misc: Flake8
  ZoeLeibowitz
  committed
  7e21e5b
Commits on Jun 10, 2025
- misc: Fix merge conflicts with main
  ZoeLeibowitz
  committed
  f2a7df1
- misc: Fix merge leftover
  ZoeLeibowitz
  committed
  44b4aeb
- dsl/compiler: Edits to mixed solver functionality
  ZoeLeibowitz
  committed
  92edf68
- compiler: Working petscbundle
  ZoeLeibowitz
  committed
  f6b38ed
- compiler: Add PetscMixin to simplify priority destroys
  ZoeLeibowitz
  committed
  7300c8f
- compiler: Working reuse_efunc for petscbundles
  ZoeLeibowitz
  committed
  1ddc053
- dsl/compiler: Zero columns for essential bcs
  ZoeLeibowitz
  committed
  6834611
- dsl: Compatible scaling of jacobian
  ZoeLeibowitz
  committed
  9642278
- dsl: Scale boundary rows of jacobian
  ZoeLeibowitz
  committed
  ce9150f
- types: Edit PetscMixin and use it in other petsc classes
  ZoeLeibowitz
  committed
  f7e00bb
- dsl: Add extraction file
  ZoeLeibowitz
  committed
  6e20d4b
- dsl: Move symbolic extraction functions outside of the PETSc module
  ZoeLeibowitz
  committed
  8a79fcd
- types: Move EssentialBC to another file
  ZoeLeibowitz
  committed
  3000bd8
- dsl/compiler: Add equation.py to petsc module
  ZoeLeibowitz
  committed
  a0457f0
- dsl: Add jacobian class for single fields
  ZoeLeibowitz
  committed
  7132eb1
- dsl: Fix compatible scaling for single fields
  ZoeLeibowitz
  committed
  6897ab8
- dsl: Improve Jacobian abstraction
  ZoeLeibowitz
  committed
  8386992
- examples: Add pressure norm check in stokes example
  ZoeLeibowitz
  committed
  fb20781
- tests: Add more petsc tests for linear coupled
  ZoeLeibowitz
  committed
  5c1b686
- misc: Merge petsc branch in but broken petscbundle
  ZoeLeibowitz
  committed
  b0ca11f
- types: Fix PetscBundle symbolic shape
  ZoeLeibowitz
  committed
  b6710be
- tests: Fix petsc tests
  ZoeLeibowitz
  committed
  01d153a
Commits on Jun 11, 2025
- misc: Address comments
  ZoeLeibowitz
  committed
  d6bd4f4
- misc: Merge leftover
  ZoeLeibowitz
  committed
  4fad6aa
- Merge pull request #2588 from devitocodes/JDBetteridge/petsc_fix_pytest_log_warning
  ZoeLeibowitz
  authored
  6b6ad4f
- Merge branch 'petsc' into biharmonic
  ZoeLeibowitz
  committed
  525fdf6
- compiler: Edit switch_log_level
  ZoeLeibowitz
  committed
  27dd201
- tests: Add mpi petsc test
  ZoeLeibowitz
  committed
  30ed5ba
- misc: Address more comments and add docstrings
  ZoeLeibowitz
  committed
  51d4d7e
Commits on Jun 12, 2025
- misc: Clean up more docstrings
  ZoeLeibowitz
  committed
  a4a5660
- misc: Add BaseJacobian
  ZoeLeibowitz
  committed
  312c826
Commits on Jun 13, 2025
- misc: Docstrings, stop list output for PETScSolve, tests
  ZoeLeibowitz
  committed
  048f693
- misc: Flake8
  ZoeLeibowitz
  committed
  905def2
- misc: Fix exprs in 01_navierstokes.py due to change in PETScSolve output type
  ZoeLeibowitz
  committed
  19fddbe
- Merge branch 'biharmonic' into petsc_mpi
  ZoeLeibowitz
  committed
  6972cbc
- misc: Clean up
  ZoeLeibowitz
  committed
  8037cf9
- misc: Utilise zero_vector function
  ZoeLeibowitz
  committed
  8c16f2e
- Merge branch 'biharmonic' into petsc_mpi
  ZoeLeibowitz
  committed
  dcbf929
- misc: Move vecset to function inside iet/utils.py
  ZoeLeibowitz
  committed
  f3d4d2d
- misc: Flake8
  ZoeLeibowitz
  committed
  8d10b87
- misc: Clean up
  ZoeLeibowitz
  committed
  53b58a9
Commits on Jun 15, 2025
- misc: Add more tests
  ZoeLeibowitz
  committed
  857eb9c
Commits on Jun 16, 2025
- mpi: Start parallel tests
  ZoeLeibowitz
  committed
  7a5b10f
- add to petsc laplacian test
  ZoeLeibowitz
  committed
  467c19b
- merge conflict
  ZoeLeibowitz
  committed
  343ba75
- mpi tests
  ZoeLeibowitz
  committed
  d2e3eb5
- edit test
  ZoeLeibowitz
  committed
  6165373
- tests: Add petsc parallel test
  ZoeLeibowitz
  committed
  0b43ea6
- clean up
  ZoeLeibowitz
  committed
  62d0045
- misc: Simplify comm extraction in lower_petsc
  ZoeLeibowitz
  committed
  bd96379
- clean up
  ZoeLeibowitz
  committed
  ce5cf82
- trigger petsc CI
  ZoeLeibowitz
  committed
  b7c4082
Commits on Jun 17, 2025
- misc: Add todo:
  ZoeLeibowitz
  committed
  e485c9c
- address some of ed's comments
  ZoeLeibowitz
  committed
  df4e638
- misc: Address comments
  ZoeLeibowitz
  committed
  72e8222
Commits on Jun 19, 2025
- Merge pull request #2635 from devitocodes/petsc_mpi
  ZoeLeibowitz
  authored
  b72465f
Commits on Jul 14, 2025
- dsl/compiler: Add PETSc logging instrastructure and tests
  ZoeLeibowitz
  committed
  16be19a
- Merge pull request #2655 from devitocodes/petsc_performance_summary
  ZoeLeibowitz
  authored
  f790ab9
- compiler: Fix language summary
  ZoeLeibowitz
  committed
  e3e26f0
- misc: Fix advisor profiling with new language arg
  ZoeLeibowitz
  committed
  9a182da
Commits on Jul 16, 2025
- misc: Clean up and docstrings
  ZoeLeibowitz
  committed
  774af10
Commits on Jul 17, 2025
- misc: Clean up
  ZoeLeibowitz
  committed
  910c987
- misc: flake8
  ZoeLeibowitz
  committed
  ff4b2d7
Commits on Jul 30, 2025
- Merge pull request #2626 from devitocodes/biharmonic
  ZoeLeibowitz
  authored
  91c91c3
Commits on Aug 18, 2025
- misc: Merge with main
  ZoeLeibowitz
  committed
  70d1719
- tests: Update petsc tests since merging with latest main
  ZoeLeibowitz
  committed
  3044691
- misc: Flake8
  ZoeLeibowitz
  committed
  4139a3f
Commits on Sep 19, 2025
- dsl/compiler: Extend solver_parameters handling in PETScSolve and update logging (#2718)
  ZoeLeibowitz
  authored
  7c69c4d
- workflows: Fix segfault in parallel tests
  ZoeLeibowitz
  committed
  a19f136
Commits on Sep 22, 2025
- PETSc clean up (#2740)
  ZoeLeibowitz
  authored
  cdb83ef
- Merge branch 'main' into petsc
  ZoeLeibowitz
  committed
  c51d394
Commits on Sep 23, 2025
- misc: Fixes since merge with main
  ZoeLeibowitz
  committed
  bf52c5b
- tests: Edit test_special_array_definition
  ZoeLeibowitz
  committed
  807396c
Commits on Oct 24, 2025
- misc: Merge with main
  ZoeLeibowitz
  committed
  29e188d
- types: Add is_CompositeObject to handle dereferencing petscstruct types
  ZoeLeibowitz
  committed
  fd4b0e8
Commits on Oct 29, 2025
- Merge branch 'main' into petsc
  ZoeLeibowitz
  committed
  9451510
Commits on Jan 6, 2026
- merge petsc with main
  ZoeLeibowitz
  committed
  cde2198
Commits on Jan 7, 2026
- tests: Fix petsc test
  ZoeLeibowitz
  committed
  501e1f9
Commits on Jan 8, 2026
- ci: Edit Dockerfile.petsc, add docker-petsc.yml and clean up pytest-petsc.yml (#2779)
  ZoeLeibowitz
  authored
  a91bdaf
Commits on May 22, 2026
- Utilise `PetscSection` to constrain essential boundary conditions (#2844)
  ZoeLeibowitz
  authored
  f5b60f2
Commits on May 27, 2026
- misc: Merge main into petsc branch
  ZoeLeibowitz
  committed
  d0d0486
- misc: Isort and flake8 petsc branch since merge with main
  ZoeLeibowitz
  committed
  98880f1
- misc: Fix wrong merge conflict fix with main
  ZoeLeibowitz
  committed
  bc0df09
- misc: Fix bad merge with main
  ZoeLeibowitz
  committed
  55885ed
- misc: _mem_shared lost @property in merge
  ZoeLeibowitz
  committed
  b9ef3a5
Commits on May 28, 2026
- misc: Fix sympy_dtype since merge with main
  ZoeLeibowitz
  committed
  53ea762
- misc: Lint petsc branch
  ZoeLeibowitz
  committed
  e44313e
- misc: Lint docker and yaml files
  ZoeLeibowitz
  committed
  2698ce8

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