Issues

• Add pytest-cov to test coverage of the generated Python classes

  cancerDHC/example-data#46 · Filter by author gaurav opened on Dec 9, 2021

• Remove direct link to CRDCH schema

  cancerDHC/example-data#45 · Filter by author gaurav opened on Dec 9, 2021

• Fix bugs in automated GDC to CRDCH transformation script

  cancerDHC/example-data#40 · Filter by author gaurav opened on Nov 18, 2021

• Uncomment non-validating data from the CCDH Pilot examples and fix CRDCH model so that they work correctly

  cancerDHC/example-data#39 · Filter by author gaurav opened on Nov 18, 2021
  1

• Rename example-data repo to something more self explanatory?

  question
  cancerDHC/example-data#38 · Filter by author sujaypatil96 opened on Nov 17, 2021
  5

  

• Conversion examples for Clinical Trials Data Commons?

  cancerDHC/example-data#36 · Filter by author turbomam opened on Nov 10, 2021 · Future goals
  2

• Tools team's responsibility for secure computing and Authority to Operate?

  cancerDHC/example-data#35 · Filter by author turbomam opened on Nov 10, 2021 · Future goals
  1

• Implement example mapping activities as APIs

  cancerDHC/example-data#34 · Filter by author turbomam opened on Nov 10, 2021
  1

• Ongoing discussion about where to find mappings for terms as well as values

  cancerDHC/example-data#31 · Filter by author turbomam opened on Nov 10, 2021
  4

• Try out JSON-based methods for recording provenance

  cancerDHC/example-data#30 · Filter by author gaurav opened on Nov 2, 2021 · Develop a method for maintaining provenance during metadata transformations (Phase 3, Quarter 1, 2022)
  1

• Think about removing spaces from filenames in this repo

  cancerDHC/example-data#29 · Filter by author gaurav opened on Oct 28, 2021 · Future goals

• update notebooks: switch from enums to codable concepts

  cancerDHC/example-data#27 · Filter by author turbomam opened on Oct 21, 2021 · Build a complete Example Data workflow (Phase 3, Quarter 4, 2021)
  5

  

• Update Jupyter Notebooks to use crdch_model from Pipfile

  cancerDHC/example-data#25 · Filter by author gaurav opened on Oct 11, 2021 · Build a complete Example Data workflow (Phase 3, Quarter 4, 2021)

• Cannot install pandas on my computer: odd numpy error

  cancerDHC/example-data#23 · Filter by author gaurav opened on Oct 10, 2021 · Build a complete Example Data workflow (Phase 3, Quarter 4, 2021)
  1

  

• Document a flow for new use cases to be proposed and developed

  cancerDHC/example-data#19 · Filter by author gaurav opened on Sep 3, 2021 · Make the Example Data repo easier to navigate and use

• Integrate Jupyter Notebooks into automated testing

  enhancement
  cancerDHC/example-data#18 · Filter by author gaurav opened on Sep 3, 2021 · Build a complete Example Data workflow (Phase 3, Quarter 4, 2021)

• Add code and data to query multiple nodes and convert the resulting data into the CRDCH model

  cancerDHC/example-data#16 · Filter by author gaurav opened on Aug 4, 2021 · Demonstrate harmonization from multiple nodes (Phase 3, Quarter 4, 2021)

• Add @type to the JSON-LD output

  buggood first issue
  cancerDHC/example-data#15 · Filter by author gaurav opened on Jul 29, 2021 · Demonstrate harmonization of multiple CRDCH entities (Phase 3, Quarter 4, 2021)
  1

• Add a LICENSE file to this repository

  good first issue
  cancerDHC/example-data#12 · Filter by author gaurav opened on Jul 9, 2021 · Build a complete Example Data workflow (Phase 3, Quarter 4, 2021)
  1

• Create example CRDC-H files in several formats and ensure that they can be validated

  cancerDHC/example-data#10 · Filter by author gaurav opened on Jul 6, 2021 · Build a complete Example Data workflow (Phase 3, Quarter 4, 2021)

• Add PDC import and show how the CCDH model can be used to synthesize data between GDC and PDC

  use case
  cancerDHC/example-data#9 · Filter by author gaurav opened on Jul 6, 2021 · Demonstrate harmonization from multiple nodes (Phase 3, Quarter 4, 2021)

• Add support for extracting the full sample/portion/analyte hierarchy from GDC

  good first issueuse case
  cancerDHC/example-data#6 · Filter by author gaurav opened on May 31, 2021 · Demonstrate harmonization of multiple CRDCH entities (Phase 3, Quarter 4, 2021)

• Add support for additional Jupyter Notebook tools

  cancerDHC/example-data#5 · Filter by author gaurav opened on Apr 29, 2021 · Make the Example Data repo easier to navigate and use
  1