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@bioinfocz

Laboratory of Genomics and Bioinformatics

Institute of Molecular Genetics of the Czech Academy of Sciences

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  1. scdrake scdrake Public

    A pipeline for droplet-based single-cell RNA-seq and spot-based spatial transcriptomics data secondary analysis implemented in the drake Make-like pipeline toolkit for the R language.

    R 17 4

Repositories

Showing 10 of 11 repositories
  • ELIXIR-SCO-spatial-omics-2026 Public Forked from elixir-europe-training/ELIXIR-SCO-spatial-omics-2026

    Single-Cell Analysis & Spatial Transcriptomics, December 9–11 2026, IMG Prague

    bioinfocz/ELIXIR-SCO-spatial-omics-2026's past year of commit activity
    HTML 0 CC-BY-4.0 7 0 0 Updated Nov 12, 2026
  • exp_heatmap Public

    Extended Cross-Population (ExP) Heatmap

    bioinfocz/exp_heatmap's past year of commit activity
    Python 5 MIT 0 0 0 Updated Oct 1, 2026
  • Course-on-scRNA-seq-data-analysis Public

    Reproduction of SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    bioinfocz/Course-on-scRNA-seq-data-analysis's past year of commit activity
    HTML 0 CC-BY-4.0 2 0 0 Updated Sep 22, 2026
  • IMG-Statistics-in-Python-Course Public Forked from sib-swiss/introduction-to-statistics-with-python-training

    material for the "Introduction to Statistics with Python"

    bioinfocz/IMG-Statistics-in-Python-Course's past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 4 0 0 Updated Jul 2, 2026
  • scdrake Public

    A pipeline for droplet-based single-cell RNA-seq and spot-based spatial transcriptomics data secondary analysis implemented in the drake Make-like pipeline toolkit for the R language.

    bioinfocz/scdrake's past year of commit activity
    R 17 MIT 4 0 1 Updated Aug 27, 2025
  • scTargets Public
    bioinfocz/scTargets's past year of commit activity
    R 1 0 0 0 Updated May 20, 2025
  • rnamod Public

    Find RNA methylation

    bioinfocz/rnamod's past year of commit activity
    Python 4 MIT 0 0 0 Updated Dec 3, 2020
  • ComplexHeatmap-intro Public

    ComplexHeatmap introduction

    bioinfocz/ComplexHeatmap-intro's past year of commit activity
    HTML 2 MIT 0 0 0 Updated Oct 13, 2020
  • Cerebro Public Forked from romanhaa/Cerebro

    Visualization of scRNA-seq data.

    bioinfocz/Cerebro's past year of commit activity
    C++ 0 MIT 23 0 0 Updated Jan 6, 2020
  • scripts Public

    Some of our scripts which could be useful.

    bioinfocz/scripts's past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Nov 1, 2018
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