All pull requests

Pull requests

• Class balancing is ignored in cross-validation

  #144·ellispatrick opened Oct 10, 2026Member·

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• 17/ New classifiers: aorsf, glmboost (boosted Cox), LiblineaR and ncvreg (Suggests)

  #143·ellispatrick opened Oct 10, 2026Member·

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• 16/ One registry of classifiers and feature selection methods (no change to results)

  #142·ellispatrick opened Oct 10, 2026Member·

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• 15/ Defaults and dependencies: no rebalancing and serial by default; five packages to Imports, three dropped

  #141·ellispatrick opened Oct 10, 2026Member·

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• int/ #135–#139 together for testing (not for merging)

  #140·ellispatrick opened Oct 10, 2026Member·

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• 13/ Penalised GLM: lambda by 5-fold cross-validation; lambda filter considers every class (changes results)

  #139·ellispatrick opened Oct 10, 2026Member·

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• 14/ prepareData: clear error for a missing or empty outcome (results unchanged)

  #138·ellispatrick opened Oct 10, 2026Member·

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• 12/ Speed and default changes: random forest ranking and mtry, binomial GLM, likelihood ratio, XGB rounds, merge selection cache, light nested CV

  #137·ellispatrick opened Oct 10, 2026Member·

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• 10/ Metrics and plots: no internal rounding, tied risks count 1/2, fold grouping for all metrics, chance line per metric (changes results slightly)

  #136·ellispatrick opened Oct 10, 2026Member·

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• 11/ Classifier fixes: naive Bayes crossovers, Fisher score, kNN exact matches, previousSelection, ensemble selection, tuning warning

  #135·ellispatrick opened Oct 10, 2026Member·

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• 9/9 Cox elastic net: lambda path ends at 0.05 of the largest value by default (changes results; 6.6x faster)

  #134·ellispatrick opened Oct 9, 2026Member·

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• 8/8 Release notes, version 3.17.2, help pages

  #133·ellispatrick opened Oct 9, 2026Member·

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• 7/8 All assays in a crossValidate call share the same folds (changes results; decision)

  #132·ellispatrick opened Oct 9, 2026Member·

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• 6/8 Faster cross-validation: one pool forked once per call, faster interfaces (results unchanged)

  #131·ellispatrick opened Oct 9, 2026Member·

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• 5/8 Maintenance: one multiview branch, small fixes, dead code removed (results unchanged)

  #130·ellispatrick opened Oct 9, 2026Member·

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• 4/8 Precision pathways and crissCrossValidate fixes (cumulative costs, honest diagonal)

  #129·ellispatrick opened Oct 9, 2026Member·

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• 3/8 Metrics and plots: vectorised C-index, AUC and ROC (identical values); fixes

  #128·ellispatrick opened Oct 9, 2026Member·

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• 2/8 Fixes to classifier and ranking interfaces (DLDA prior, GLM intercept, XGB for xgboost 3, ...)

  #127·ellispatrick opened Oct 9, 2026Member·

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• 1/8 Tests and fixes to the cross-validation driver, train/predict and prepareData

  #126·ellispatrick opened Oct 9, 2026Member·

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• Audit fixes, shared folds and faster cross-validation (3.17.2)

  #125·ellispatrick opened Oct 9, 2026Member·

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