Issues

• wget is an optional requirement

  StevenWingett/FastQ-Screen#82 · Filter by author fbnrst opened on Jul 5, 2025
  1

• fastq_screen --get_genomes fails

  StevenWingett/FastQ-Screen#81 · Filter by author fbnrst opened on Jul 5, 2025

• Interpreting ribosomal RNA contamination

  StevenWingett/FastQ-Screen#77 · Filter by author PietroD opened on Nov 14, 2024
  1

• no minimap2 index was found

  StevenWingett/FastQ-Screen#76 · Filter by author johnstonmj opened on Nov 6, 2024
  1

• FastQ-Screen does not recognize BWA index file with ".64" extension

  StevenWingett/FastQ-Screen#75 · Filter by author LauraEgolf opened on Oct 10, 2024
  1

• fastq screen is not screening against the added genome

  StevenWingett/FastQ-Screen#73 · Filter by author Ayush09-cmd opened on Sep 12, 2024
  1

• Doesn't match if U nucleotide used in sequence

  StevenWingett/FastQ-Screen#68 · Filter by author keenhl opened on Feb 26, 2024
  3

• Filtering bisulfite fastq files

  StevenWingett/FastQ-Screen#63 · Filter by author amsparks opened on Jul 26, 2023
  3

• Using pigz for parallel gzip operations

  StevenWingett/FastQ-Screen#58 · Filter by author JoshLoecker opened on Nov 4, 2022
  2

• Processing very long reads

  enhancementpriority
  StevenWingett/FastQ-Screen#34 · Filter by author StevenWingett opened on Nov 11, 2020
  2

• Message when passed non-valid path to bowtie2

  Could do better
  StevenWingett/FastQ-Screen#33 · Filter by author StevenWingett opened on Oct 22, 2020

• rRNA genome

  enhancement
  StevenWingett/FastQ-Screen#30 · Filter by author StevenWingett opened on Sep 24, 2020
  6

• fastq_screen does not yield non-zero exit code when aligner returns non-zero exit code

  Could do better
  StevenWingett/FastQ-Screen#28 · Filter by author k1sauce opened on Jul 2, 2020
  1

• Create a DockerHub container

  enhancementgood first issue
  StevenWingett/FastQ-Screen#21 · Filter by author StevenWingett opened on Jun 2, 2020
  4

• FASTA files

  enhancementgood first issue
  StevenWingett/FastQ-Screen#20 · Filter by author StevenWingett opened on Jun 2, 2020