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Massive cleanup for paper submission - #87
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…nt paths to align with paper
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Alot of things drifted between initial experimentation, initial paper submission, rebuttal experiments, and paper resubmission. This PR aims to clean all that up and also adds in some extended experiments we're conduction. A high level list of changes is below:
protossl/models/_protoecgnet.pyandprotossl/protoecgnet_trainer.pywhich enables multiarm ProtoECGNet (1D-global, 2D-global, 2D-partial arms), a fusion classifier, a fusion-embedding stage, tuning, and bootstrapped evaluation, all trained over HEEDB. Configs, scripts, and notebooks are underlarge-user-study/.heedb_split_typeto split HEEDB other than by year, anddrop_blank_overreadto drop ECGs with no physician overread.USE_HEEDB_150env var toggle to switch to the 150-label HEEDB target set. Adds pretraining configs and scripts for ProtoSSL and supervised prototypes on this setBlackboxContrastermodel andtrain-contrasterstage for baseline PCLR pretraining over HEEDB. Adds PCLR embedding extraction and a logistic-regression probe on those embeddings (5-3-run-pclr-logreg.sh,queue-pclr-logreg.sh).data_wrapper_kwargstoLitDatain trainer for the contrastive wrapper datasets, anddata_kwargsnow goes to the base datasetlabsup-proto/prosup→supprotoandpass→protosslacross scripts and run directories