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@SingleR-inc

SingleR-inc

Code and resources for the SingleR method
README.md

Cell type annotation for single-cell data

This organization manages the code for the SingleR Bioconductor package and associated resources. (No, we're not really a corporation, it's just that the @SingleR handle was already taken.)

To get started, check out one or more of the links below:

Python users may also be interested in the Python implementation.

The cool logo was derived from the sticker for the package.

Popular repositories Loading

  1. SingleR SingleR Public

    Clone of the Bioconductor repository for the SingleR package.

    R 205 21

  2. celldex celldex Public

    Collection of cell type reference datasets.

    R 68 9

  3. singler-py singler-py Public

    Python bindings for SingleR

    Python 16

  4. SingleRBook-base SingleRBook-base Public archive

    See https://github.com/LTLA/SingleRBook for the latest version of this content.

    TeX 14 8

  5. SingleRBook SingleRBook Public

    The package wrapping the book, for deployment via the Bioconductor build system.

    TeX 6 1

  6. celldex-py celldex-py Public

    Collection of reference cell type datasets

    Python 2

Repositories

Showing 10 of 13 repositories
  • SingleR Public

    Clone of the Bioconductor repository for the SingleR package.

    SingleR-inc/SingleR's past year of commit activity
    R 205 GPL-3.0 21 19 1 Updated Sep 10, 2026
  • singlepp Public

    Pure C++ implementation of the SingleR method for cell type annotation

    SingleR-inc/singlepp's past year of commit activity
    C++ 1 MIT 0 0 0 Updated Sep 2, 2026
  • singler_classic_markers Public

    Classic marker detection for SingleR

    SingleR-inc/singler_classic_markers's past year of commit activity
    C++ 0 MIT 0 0 0 Updated Aug 28, 2026
  • singler-py Public

    Python bindings for SingleR

    SingleR-inc/singler-py's past year of commit activity
    Python 16 MIT 0 4 0 Updated Aug 14, 2026
  • test-sparse_l2_norm Public

    Performance testing for computing correlations between sparse queries/references

    SingleR-inc/test-sparse_l2_norm's past year of commit activity
    C++ 0 MIT 0 0 0 Updated May 18, 2026
  • celldex-py Public

    Collection of reference cell type datasets

    SingleR-inc/celldex-py's past year of commit activity
    Python 2 MIT 0 0 0 Updated May 6, 2026
  • singlepp_loaders Public

    Load reference datasets for SingleR

    SingleR-inc/singlepp_loaders's past year of commit activity
    C++ 0 MIT 0 0 0 Updated Nov 27, 2025
  • SingleRBook Public

    The package wrapping the book, for deployment via the Bioconductor build system.

    SingleR-inc/SingleRBook's past year of commit activity
    TeX 6 1 0 0 Updated Mar 21, 2025
  • language-comparison Public

    Check consistency between R and Python bindings

    SingleR-inc/language-comparison's past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 8, 2025
  • .github Public

    Organization overview.

    SingleR-inc/.github's past year of commit activity
    0 MIT 0 0 0 Updated Jan 1, 2025
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