Issues

• ‘lmer’ method in Zlm function obviates first factor level

  RGLab/MAST#195 · Filter by author juanmoriano opened on Jul 24, 2025

• Does the output coef mean lnFC or log2FC?

  RGLab/MAST#193 · Filter by author Mark-wt opened on Jul 7, 2025

• When I try to install "MAST", the error occurred as follows and installation halted.

  RGLab/MAST#192 · Filter by author rheupion opened on May 6, 2025
  1

• Residual hook causes NAs

  RGLab/MAST#191 · Filter by author JThomasWatson opened on Oct 14, 2024
  2

• DEG counts are associated with the number of cells

  RGLab/MAST#188 · Filter by author ZunpengLiu opened on May 8, 2024

• Error: grouping factors must have > 1 sampled level

  RGLab/MAST#187 · Filter by author andrewsong777 opened on Mar 4, 2024
  1

• Error in getClassDef(x@superClass, package = packageSlot(x))@virtual : no applicable method for @ applied to an object of class "NULL"

  RGLab/MAST#184 · Filter by author nfancy opened on Jan 17, 2024
  10

• Error in validObject(.Object): invalid class “corMatrix” object: 'sd' slot has nonfinite elements

  RGLab/MAST#180 · Filter by author derrik-gratz opened on Sep 18, 2023
  7

• lrTest's with CoefficientHypothesis and contrast matrix give inconsistent results

  RGLab/MAST#178 · Filter by author ImNotaGit opened on Mar 21, 2023

• p values not reported for all features

  RGLab/MAST#177 · Filter by author susheelbhanu opened on Jan 25, 2023

• Low logFCs and failure to converge?

  RGLab/MAST#173 · Filter by author learning-MD opened on Mar 29, 2022

• Support for passing hypothesis to doLRT in summary() as in lrTest()

  RGLab/MAST#171 · Filter by author ImNotaGit opened on Dec 23, 2021
  6

• What should I do with the "NaN" values, with extremely small Pr(>Chisq) in the coef column of the summary(zlmCond) result?

  RGLab/MAST#168 · Filter by author danli349 opened on Nov 30, 2021

• Applicability of MAST to spatial transcriptomics analyses without single-cell resolution

  RGLab/MAST#166 · Filter by author jeremycfd opened on Aug 9, 2021

• Deviance

  RGLab/MAST#155 · Filter by author sofiapuvogelvittini opened on Apr 15, 2021
  2

• gseaAfterBoot enriched genes

  RGLab/MAST#154 · Filter by author EBosi opened on Apr 13, 2021
  5

• Convergence issues due to all cells in comparison expressed certain genes?

  RGLab/MAST#151 · Filter by author hoholee opened on Mar 4, 2021
  2

• Problems when fitting a linear-mixed model ('glmer') with sc-RNAseq data

  RGLab/MAST#148 · Filter by author aidarripoll opened on Dec 4, 2020
  4

• Error: grouping factors must have > 1 sampled level

  RGLab/MAST#146 · Filter by author esrasefik opened on Nov 28, 2020
  4

• Discrepancy between including factors as covariates directly vs hard-coding dummy variables

  RGLab/MAST#144 · Filter by author jmchan88 opened on Nov 12, 2020
  5

• Unexpected Large Confidence Interval of LogFC

  RGLab/MAST#142 · Filter by author JiaxinLi-LiGaZn opened on Oct 13, 2020
  2

• DE between different groups : post-hoc tests?

  RGLab/MAST#139 · Filter by author fabien-tell opened on Jul 10, 2020
  3

• bootVcov1 gives an error due to differences in the dimension of the bootstraps

  RGLab/MAST#131 · Filter by author jaquol opened on Apr 22, 2020
  6

• Speed up fitting process when including random effect with lme4?

  RGLab/MAST#130 · Filter by author hoholee opened on Apr 8, 2020
  5

• Working weights are not updated properly in bayesglm.R

  RGLab/MAST#110 · Filter by author NikTuzov opened on Apr 16, 2019
  25