Initial doc changes - #102
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cliulucien wants to merge 9 commits into
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cliulucien wants to merge 9 commits into
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cliulucien
marked this pull request as draft
September 23, 2026 09:58
…tyLab.py into initial_doc_changes
…ot faimliar with FPM.
Contributor
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HI @cliulucien, looks like some serious bugs. If you see them, please report it separately under issues and if you fix those, please do so with a separate PR tagging those issues. |
| Integrated intensity of each measurement frame. | ||
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| maxProbePower (float): | ||
| Maximum integrated-amplitude scale derived from the ptychogram. |
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This isn't very clear sounding to me. Can we rephrase?
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Follow-up issues noticed during documentation review
ExperimentalData.py
binData()updates the ptychogram but does not refresh derived detector/data quantities via_setData(). It may also need to update the effective detector pixel sizedxdafter binning, depending on the intended convention.relative_intensity()is documented as comparing a frame to the brightest one, but the implementation normalizes bymean + 2 * stdinstead of the maximum intensity.Reconstruction.py
initializeObject()andinitializeProbe()and may deserve cleanup.expand_npsminload_probe()is currently unused. Determine whether this is legacy API or an unfinished feature._center_probe_angle(): np.squeeze(self.probe)[0]becomes 1D for single-mode probes but 2D for multi-mode probes.saveResults(): Use context managers consistently for FPM and probe-stack output to ensure HDF5 files are closed.I objectandI probestore amplitudes (abs) rather than intensities (abs**2).