All pull requests

Pull requests

• Bump nanoid from 3.3.7 to 3.3.18 in /gemma-web/src/main/webapp

  dependenciesjavascript
  #1691·dependabot[bot] opened Sep 1, 2026Bot·

  ·

• Bump postcss from 8.4.49 to 8.5.25 in /gemma-web/src/main/webapp

  dependenciesjavascriptminor
  #1679·dependabot[bot] opened Jul 31, 2026Bot·

  ·

• Bump webpack-dev-server from 5.1.0 to 5.2.6 in /gemma-web/src/main/webapp

  dependenciesjavascriptminor
  #1678·dependabot[bot] opened Jul 27, 2026Bot·

  ·

• Bump shell-quote from 1.8.1 to 1.10.0 in /gemma-web/src/main/webapp

  dependenciesjavascriptminor
  #1675·dependabot[bot] opened Jul 20, 2026Bot·

  ·

• Bump websocket-driver from 0.7.4 to 0.7.5 in /gemma-web/src/main/webapp

  dependenciesjavascript
  #1674·dependabot[bot] opened Jul 15, 2026Bot·

  ·

• Bump launch-editor from 2.9.1 to 2.14.1 in /gemma-web/src/main/webapp

  dependenciesjavascriptminor
  #1665·dependabot[bot] opened Jun 18, 2026Bot·

  ·

• Allow DEA to be performed on a subset of the samples

  #1627·arteymix opened Feb 24, 2026Contributor·

  ·
  18

  

• Allow using any supported identifier when linting ACLs

  #1626·arteymix opened Feb 23, 2026Contributor·

  ·

• Make the experimental design non-nullable (fix #1618)

  #1621·arteymix opened Feb 19, 2026Contributor·

  ·

  · 1.32.7
  1

  1

  

• Add support for filtering ACLs using subqueries

  #1617·arteymix opened Feb 15, 2026Contributor·

  ·

  · 1.33.0
  1

• Improvement for deployment script

  #1614·arteymix opened Feb 14, 2026Contributor·2 tasks·

  ·
  6

  

• hiding expression and qc windows when no data is present

  #1607·oganm opened Feb 5, 2026Member·

  ·
  3

• Improvements for ACL advice

  #1600·arteymix opened Jan 28, 2026Contributor·

  ·

  · 1.33.0
  1

• Improve dataset splitting

  enhancementtesting
  #1589·arteymix opened Jan 14, 2026Contributor·

  ·

  · 1.32.7
  1

  2

• Reapply "More improvements for data matrices"

  #1579·arteymix opened Dec 17, 2025Contributor·

  ·
  1

• Feature improve detection of experiment type

  #1543·arteymix opened Oct 30, 2025Contributor·

  ·

• Add a basic data processing report

  enhancement
  #1529·arteymix opened Oct 7, 2025Contributor·

  ·

  · 1.33.0

• Prototype for loading cell-by-gene matrices

  low priority
  #1525·arteymix opened Oct 6, 2025Contributor·3 tasks·

  ·
  1

• Mark ExperimentalFactor as auto-generated

  #1499·arteymix opened Aug 26, 2025Contributor·

  ·

  · 1.33.0
  1

• Bump org.apache.commons:commons-lang3 from 3.14.0 to 3.18.0

  dependenciesjavaminor
  #1480·dependabot[bot] opened Aug 5, 2025Bot·

  ·

• Bump commons-fileupload:commons-fileupload from 1.5 to 1.6.0

  dependenciesjavaminor
  #1478·dependabot[bot] opened Aug 5, 2025Bot·

  ·

• Single-cell batch correction

  #1474·arteymix opened Aug 3, 2025Contributor·5 tasks·

  ·
  1

  1

• Add other accessions for ExpressionExperiment, BioAssay and BioMaterial

  #1471·arteymix opened Aug 3, 2025Contributor·

  ·

  · 1.33.0
  1

• Cell-level measurements

  low prioritysingle cell
  #1375·arteymix opened Apr 19, 2025Contributor·4 of 9 tasks·

  ·

  · 1.33.0
  2

  2

• Add support for loading simple cell type annotations from GEO supplem…

  #1311·arteymix opened Dec 20, 2024Contributor·

  ·