Update the Python package metadata and dataset loader - #493
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Pipeline Hardening/Debugging PR # 15
Update the Python package metadata and dataset loader
Brings the installable
coderdataPython package in line with the new datasets and the new phosphoproteomics data type, so users can download and load everything the build now produces.Dataset registry (
coderdata/dataset.yml)Loader (
coderdata/dataset/dataset.py)phosphoproteomicsandphosphositesas first-class loadable attributes on the dataset object, each with the usual getter, setter, and deleter, so the new data type loads alongside transcriptomics, proteomics, and the rest.Downloader (
coderdata/download/downloader.py)phosphositesfiles when selecting what to download, so the phosphosite reference is fetched with the dataset when it is available.Notes
Scope: 3 files. Base: validation-and-improve-prep. This is the top of the stack.
Related issues
Closes #477