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PDBe EMBL-EBI

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  1. arpeggio arpeggio Public

    Calculation of interatomic interactions in molecular structures

    Python 143 24

  2. ccdutils ccdutils Public

    A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

    Python 84 12

  3. pdbe-api-training pdbe-api-training Public

    Interactive Python notebooks for PDBe API training

    Jupyter Notebook 61 21

  4. pdb-images pdb-images Public

    Generates images from mmCIF/BCIF files

    TypeScript 46 5

  5. SIFTS SIFTS Public

    Python 42 2

  6. PDBe-MCP-Servers PDBe-MCP-Servers Public

    PDBe MCP Servers integrate Protein Data Bank Europe resources with LLMs via Model Context Protocol. Provides seamless access to protein structure data through API tools and graph database schema as…

    Python 39 1

Repositories

Showing 10 of 49 repositories
  • mmcif-gen Public

    This application is designed to create mmcif files from facilities data.

    PDBeurope/mmcif-gen's past year of commit activity
    Python 7 1 2 0 Updated Sep 21, 2026
  • InsightFold Public

    Notebook-Driven Development to nurture new features supported and maintained by our diverse user base.

    PDBeurope/InsightFold's past year of commit activity
    Jupyter Notebook 0 1 0 11 Updated Sep 21, 2026
  • protvista-pdb Public

    PDB ProtVista Viewer

    PDBeurope/protvista-pdb's past year of commit activity
    JavaScript 11 Apache-2.0 8 0 13 Updated Sep 18, 2026
  • mmcif-validator Public

    Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.

    PDBeurope/mmcif-validator's past year of commit activity
    Python 11 3 0 0 Updated Sep 18, 2026
  • ner_for_protein_structures Public
    PDBeurope/ner_for_protein_structures's past year of commit activity
    Python 1 0 0 1 Updated Sep 18, 2026
  • pdbe-data-schemas Public

    Data schemas, examples, and validation tools for integrating partner and community data into PDBe, PDBe-KB, and AlphaFold DB.

    PDBeurope/pdbe-data-schemas's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Sep 17, 2026
  • BioSolr Public Forked from flaxsearch/BioSolr

    A project aiming "to significantly advance the state of the art with regard to indexing and querying biomedical data with freely available open source software"

    PDBeurope/BioSolr's past year of commit activity
    Java 0 Apache-2.0 29 0 0 Updated Sep 17, 2026
  • ligand-env Public

    Public repository of the PDBe ligand environment component

    PDBeurope/ligand-env's past year of commit activity
    TypeScript 6 Apache-2.0 0 0 9 Updated Sep 17, 2026
  • pdb-3d-complex Public

    Summary web-component for the PDB 3D complex, a server that analyses the complexes in crystal structures

    PDBeurope/pdb-3d-complex's past year of commit activity
    TypeScript 3 Apache-2.0 1 0 6 Updated Sep 11, 2026
  • heatmap-component Public

    Canvas-based Interactive Heatmap Component

    PDBeurope/heatmap-component's past year of commit activity
    TypeScript 2 Apache-2.0 0 0 2 Updated Sep 8, 2026
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