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{2026.06}[gfbf/2026.1] Biopython 1.87 - #1689

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{2026.06}[gfbf/2026.1] Biopython 1.87#1689
signalbox2 wants to merge 2 commits into
EESSI:mainfrom
signalbox2:new_items2

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@signalbox2

@signalbox2 signalbox2 commented Sep 25, 2026

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boegel
boegel reviewed Sep 25, 2026
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Comment thread easystacks/software.eessi.io/2026.06/eessi-2026.06-eb-5.4.0-2026.1.yml
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/26890
from-commit: 0ed42e32053ef5a4cd796909ee6173f39def94b1
- lfoss-2026.1.eb
- awscli-2.35.11-GCCcore-15.2.0

@boegel boegel Sep 25, 2026

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@signalbox2 awscli shouldn't be here, that's being handled via your other PR:

Can you remove that line?

@boegel boegel changed the title Biopython 1.87 {2026.06}[gfbf/2026.1] Biopython 1.87 Sep 25, 2026
@boegel

boegel commented Sep 25, 2026

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bot: build repo:eessi.io-2026.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2026.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

@eessi-bot-aws

eessi-bot-aws Bot commented Sep 25, 2026 •
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New job on instance eessi-bot-mc-aws for repository eessi.io-2026.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2026.09/pr_1689/200685

date job status comment
Sep 25 22:17:41 UTC 2026 submitted job id 200685 awaits release by job manager
Sep 25 22:18:13 UTC 2026 released job awaits launch by Slurm scheduler
Sep 25 22:24:16 UTC 2026 running job 200685 is running
Sep 25 22:47:50 UTC 2026 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-200685.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.* created!
Artefacts
eessi-2026.06-software-linux-x86_64-amd-zen2-17903763640.tar.zstsize: 41 MiB (43885171 bytes)
entries: 14846
modules under 2026.06/software/linux/x86_64/amd/zen2/modules/all
awscli/2.35.11-GCCcore-15.2.0.lua
Biopython/1.87-gfbf-2026.1.lua
boto3/1.43.34-GCCcore-15.2.0.lua
ruamel.yaml/0.19.1-GCCcore-15.2.0.lua
software under 2026.06/software/linux/x86_64/amd/zen2/software
awscli/2.35.11-GCCcore-15.2.0
Biopython/1.87-gfbf-2026.1
boto3/1.43.34-GCCcore-15.2.0
ruamel.yaml/0.19.1-GCCcore-15.2.0
reprod directories under 2026.06/software/linux/x86_64/amd/zen2/reprod
awscli/2.35.11-GCCcore-15.2.0/20260925_224013UTC
Biopython/1.87-gfbf-2026.1/20260925_224400UTC
boto3/1.43.34-GCCcore-15.2.0/20260925_222601UTC
ruamel.yaml/0.19.1-GCCcore-15.2.0/20260925_222827UTC
other under 2026.06/software/linux/x86_64/amd/zen2
no other files in tarball
Sep 25 22:47:50 UTC 2026 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-200685.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@eessi-bot-jsc

eessi-bot-jsc Bot commented Sep 25, 2026 •
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New job on instance eessi-bot-jsc for repository eessi.io-2026.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2026.09/pr_1689/15657365

date job status comment
Sep 25 22:17:42 UTC 2026 submitted job id 15657365 awaits release by job manager
Sep 25 22:18:21 UTC 2026 released job awaits launch by Slurm scheduler
Sep 25 22:19:25 UTC 2026 running job 15657365 is running
Sep 25 22:35:59 UTC 2026 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-15657365.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.* created!
Artefacts
eessi-2026.06-software-linux-aarch64-nvidia-grace-17903755940.tar.gzsize: 47 MiB (49864546 bytes)
entries: 14846
modules under 2026.06/software/linux/aarch64/nvidia/grace/modules/all
awscli/2.35.11-GCCcore-15.2.0.lua
Biopython/1.87-gfbf-2026.1.lua
boto3/1.43.34-GCCcore-15.2.0.lua
ruamel.yaml/0.19.1-GCCcore-15.2.0.lua
software under 2026.06/software/linux/aarch64/nvidia/grace/software
awscli/2.35.11-GCCcore-15.2.0
Biopython/1.87-gfbf-2026.1
boto3/1.43.34-GCCcore-15.2.0
ruamel.yaml/0.19.1-GCCcore-15.2.0
reprod directories under 2026.06/software/linux/aarch64/nvidia/grace/reprod
awscli/2.35.11-GCCcore-15.2.0/20260925_222815UTC
Biopython/1.87-gfbf-2026.1/20260925_223120UTC
boto3/1.43.34-GCCcore-15.2.0/20260925_222126UTC
ruamel.yaml/0.19.1-GCCcore-15.2.0/20260925_222404UTC
other under 2026.06/software/linux/aarch64/nvidia/grace
no other files in tarball
Sep 25 22:35:59 UTC 2026 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-15657365.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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@signalbox2 @boegel