Issues

• Can OMArk classifications be manually adjusted when the default settings fail?

  DessimozLab/OMArk#55 · Filter by author HanShiling opened on Jul 1, 2026
  3

• omabrowser server not reachable

  DessimozLab/OMArk#53 · Filter by author OlivierCoen opened on Jun 18, 2026
  2

• Allow retrieving OMArk version from the CLI

  DessimozLab/OMArk#52 · Filter by author OlivierCoen opened on Jun 10, 2026
  1

• OMArk produces null OMAmer output and IndexError

  DessimozLab/OMArk#49 · Filter by author Sahar-Abdollahi opened on Oct 23, 2025
  1

• LUCA.hi5 file not detected, downloads taxdump?

  DessimozLab/OMArk#46 · Filter by author desmodus1984 opened on Jul 11, 2025
  7

• Inconsistent no. of proteins

  DessimozLab/OMArk#45 · Filter by author glmaala opened on May 16, 2025
  1

• Unexpected Low % Associated Query Proteins within the Main Species/Clade

  DessimozLab/OMArk#44 · Filter by author glmaala opened on May 15, 2025
  1

• Database and Tool updates

  DessimozLab/OMArk#43 · Filter by author sanyalab opened on Mar 6, 2025
  1

• Add an option to accept ete3 taxa.sqlite file

  DessimozLab/OMArk#41 · Filter by author xiekunwhy opened on Jan 17, 2025
  5

• question about OMArk rules and omamer result

  DessimozLab/OMArk#35 · Filter by author CAShuangchao opened on Oct 19, 2024
  2

• genus not available for taxonomic ranking

  DessimozLab/OMArk#32 · Filter by author SAMtoBAM opened on May 1, 2024

• Granulosicoccus genera not being classified in a good way by omark

  DessimozLab/OMArk#26 · Filter by author Bio-finder opened on Jan 18, 2024
  4

• Support python >3.11

  DessimozLab/OMArk#12 · Filter by author vkkodali opened on Feb 22, 2023
  4