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fix: stage rhog batch folders as path inputs in hog_big & hog_rest - #109

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alpae merged 1 commit into
devfrom
fix-stage-roothogs-as-path
Oct 22, 2026
Merged

alpae merged 1 commit into
devfrom
fix-stage-roothogs-as-path

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@alpae alpae commented Oct 22, 2026

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The batch folder was declared as each rhogsrest / each rhogsbig, i.e. a
plain value, so Nextflow passed the absolute path as a string without staging
it. Container bind mounts are derived from the staged inputs, so the folder
was only visible inside the container when it happened to fall under the
mounted common parent directory.

This fixes #108

The batch folder was declared as `each rhogsrest` / `each rhogsbig`, i.e. a
plain value, so Nextflow passed the absolute path as a string without staging
it. Container bind mounts are derived from the staged inputs, so the folder
was only visible inside the container when it happened to fall under the
mounted common parent directory.
@alpae
alpae merged commit 6acc9c9 into dev Oct 22, 2026
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@alpae
alpae deleted the fix-stage-roothogs-as-path branch October 22, 2026 14:03
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