Repository navigation

geckopy 4.0.0b2 - #83

Merged

edkerk merged 58 commits into

mainfrom

merge/main-into-release

Nov 2, 2026

Merged

geckopy 4.0.0b2#83
edkerk merged 58 commits into
mainfrom
merge/main-into-release

Commits on Sep 8, 2026
Commits on Sep 9, 2026
- BRENDA data: xz-compress at build time instead of storing xz in git
  edkerk
  committed
  2cbf08e
- cli: default brenda-refresh --cache-dir to the OS user cache dir
  edkerk
  committed
  8476c1f
Commits on Sep 11, 2026
Commits on Sep 19, 2026
- Apply evotune's trust tiers to fuzzy-matched kcats
  edkerk
  committed
  998c2cb
Commits on Sep 20, 2026
Commits on Sep 23, 2026
- BRENDA: filter implausible SA-derived kcats; default top_origin_limit 6 -> 4 (#58)
  edkerk
  authored
  fcfb0b8
- Add sweep_tunable_mask_size/recommend_target_impact_share (#59)
  edkerk
  authored
  ddaea51
Commits on Sep 24, 2026
- Fix Complex Portal search paging; correct the corrections() docs example (#60)
  edkerk
  authored
  a725bb3
Commits on Oct 17, 2026
Commits on Oct 19, 2026
- Kcat strategies, BRENDA from toolbox-assets and GECKO 3 project upgrades (#68)
  edkerk
  authored
  900f63e
Commits on Oct 24, 2026
Commits on Oct 25, 2026
Commits on Oct 28, 2026
- Merge pull request #70 from CompMetEng/parity/round-2
  edkerk
  authored
  9ebc61a
Commits on Oct 30, 2026
- Same results as GECKO for subsets, subsystems, uniprot cells, FSEOF and pFBA; scipy solver support (#72)
  edkerk
  authored
  c07b5ce
- Remove the references to the retired Bayesian kcat tuning
  edkerk
  committed
  edb3422
Commits on Oct 31, 2026
Commits on Nov 1, 2026
Commits on Nov 2, 2026