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GECKOpy version and missing dependencies #87
Description
Working on python, testing GECKOpy I got this:
For the missing dependencies (solves intalling cma, but this not appears on docs-page):
/usr/local/lib/python3.13/dist-packages/geckopy/kcat_tuning/evotune/tuning.py in <module>
63 from typing import TYPE_CHECKING, Callable, Optional, Sequence
64
---> 65 import cma
66 import cobra
67 import numpy as np
For the version (Works on raven)
print(f"✅ gecko {geckopy.__version__}")
Activity
edkerk commentedon Nov 6, 2026
The missing
cmais fixed ondevelopby #88:cmais a required dependency of geckopy, andpip install geckopyinstalls it.geckopy.__version__is added by #89. The installation page of the documentation still names the removed extrageckopy[evotune], and a documentation pull request follows. The fixes are part of the next release of geckopy. Until then,pip install cmaresolves the import error.