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Merged
edkerk merged 2 commits into from
Nov 3, 2026
Merged

Read the manifest-v5 snapshot #24

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82084a2
Read the manifest-v5 snapshot
edkerk Nov 3, 2026
c542ca6
Remove the em dashes from the changelog
edkerk Nov 3, 2026
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6 changes: 3 additions & 3 deletions CHANGELOG.md
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Expand Up @@ -4,9 +4,9 @@

### Data

* The KEGG assets are the `kegg120` release of `toolbox-assets` (was: `kegg118`), and `fetchToolboxAsset` reads the manifest `manifest-v4`.
* The KEGG assets are the `kegg120` release of `toolbox-assets` (was: `kegg118`), and `fetchToolboxAsset` reads the manifest `manifest-v5`.

## 3.0.0b2 — 2026-11-01
## 3.0.0b2 (2026-11-01)

Second beta toward 3.0. Changes below are relative to 3.0.0b1.

Expand Down Expand Up @@ -151,7 +151,7 @@ Second beta toward 3.0. Changes below are relative to 3.0.0b1.

* Help blocks of 176 files are rewritten in impersonal, present-tense wording with British spelling; the code is unchanged. Statements that differed from the code are corrected, for example `simplifyModel` `deleteDuplicates` (first occurrence kept), `removeBadRxns` `refModel`, `replaceMets` outputs, `getMinNrFluxes` `params`, `checkRaven` `developMode` and the `downloadRavenBinaries` offline bundle. `reverseRxns` has the RAVEN 3 help structure.

## 3.0.0b1 — 2026-09-07
## 3.0.0b1 (2026-09-07)

First beta toward 3.0. Changes below are relative to RAVEN 2.9.3. The last 2.x release is 2.11.4:
a reorganized codebase, fewer toolbox dependencies, hardened I/O and MILP algorithms, plus
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4 changes: 2 additions & 2 deletions src/installation/fetchToolboxAsset.m
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Expand Up @@ -9,7 +9,7 @@
% supplies the release tag and the asset name.
%
% A download is checked against the SHA-256 checksum that the
% toolbox-assets manifest (release manifest-v4) lists for it. A file whose
% toolbox-assets manifest (release manifest-v5) lists for it. A file whose
% checksum differs is deleted and an error is raised. An asset that the
% manifest does not list, or a manifest that cannot be read, gives a
% warning and the file is kept unchecked.
Expand Down Expand Up @@ -75,7 +75,7 @@
sha='';
if isempty(manifest)
try
manifest=webread('https://github.com/CompMetEng/toolbox-assets/releases/download/manifest-v4/manifest.json', ...
manifest=webread('https://github.com/CompMetEng/toolbox-assets/releases/download/manifest-v5/manifest.json', ...
weboptions('ContentType','json','Timeout',30));
catch ME
warning('RAVEN:fetchToolboxAsset:manifest','Cannot read the toolbox-assets manifest: %s',ME.message);
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