Issues

• Remove invalid predicate from Aragorn rules

  BioPack-team/shepherd#157 · Filter by author maximusunc opened on Sep 11, 2026

• Timeout budgets

  BioPack-team/shepherd#155 · Filter by author EvanDietzMorris opened on Sep 4, 2026

• Evaluate compressing messages from the ARAs up to the ARS

  BioPack-team/shepherd#144 · Filter by author maximusunc opened on Aug 28, 2026

• Discussion: statistical significance qualifier filtering — filtering belongs in Gandalf, Shepherd-side filter removal

  BioPack-team/shepherd#136 · Filter by author SkyeAv opened on Aug 6, 2026
  1

• feat: ranking & filtering support for biolink:statistical_significance_qualifier

  BioPack-team/shepherd#134 · Filter by author SkyeAv opened on Jul 28, 2026
  13

• Discussion: Serialization strategy for TRAPI messages — TOM objects, split storage, and codec options

  BioPack-team/shepherd#99 · Filter by author kennethmorton opened on Jun 8, 2026

• How do we want to handle massive omnicorp overlay queries?

  BioPack-team/shepherd#95 · Filter by author maximusunc opened on Jun 6, 2026
  2

• Save expanded query graphs to redis for debug purposes

  BioPack-team/shepherd#85 · Filter by author maximusunc opened on May 13, 2026

• Handle cases where Retriever returns 0 results and we need to send a valid response to the rest of the workflow

  BioPack-team/shepherd#83 · Filter by author maximusunc opened on May 12, 2026

• Storing and using large artifacts

  BioPack-team/shepherd#75 · Filter by author dkoslicki opened on Mar 18, 2026
  5

• Check for query completion during task retrieval

  BioPack-team/shepherd#73 · Filter by author maximusunc opened on Mar 12, 2026

• Make Shepherd dicts Python Objects

  BioPack-team/shepherd#71 · Filter by author maximusunc opened on Mar 3, 2026

• Improve Redis deployment

  BioPack-team/shepherd#51 · Filter by author maximusunc opened on Nov 19, 2025

• Log Retriever Job IDs?

  BioPack-team/shepherd#43 · Filter by author tokebe opened on Aug 22, 2025
  6

• Intermittent HTTP 403 on callbacks from Retriever

  BioPack-team/shepherd#41 · Filter by author tokebe opened on Aug 22, 2025
  2

• Fix postgres data folder for docker development

  BioPack-team/shepherd#31 · Filter by author maximusunc opened on Jul 16, 2025

• Put all worker requirements in pyproject for local development

  BioPack-team/shepherd#18 · Filter by author maximusunc opened on Jun 4, 2025

• Put in type hints to all functions

  BioPack-team/shepherd#17 · Filter by author maximusunc opened on Jun 4, 2025
  1