Skip to content
@AllenNeuralDynamics

Allen Institute for Neural Dynamics

we're hiring: https://alleninstitute.org/careers/

Popular repositories Loading

  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 41 10

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 26 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 4

Repositories

Showing 10 of 699 repositories
  • AllenNeuralDynamics/LC-beh-physiology-analysis's past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated Sep 17, 2026
  • Aind.Experiment.VrForaging Public

    A repository to run VrForaging behavior experiments and compatible physiology platforms in AIND

    AllenNeuralDynamics/Aind.Experiment.VrForaging's past year of commit activity
    Python 0 MIT 1 1 1 Updated Sep 17, 2026
  • orcid-service Public

    Resolves researcher names to ORCID iDs

    AllenNeuralDynamics/orcid-service's past year of commit activity
    Python 0 MIT 0 0 1 Updated Sep 16, 2026
  • aind-fip-dff Public

    This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

    AllenNeuralDynamics/aind-fip-dff's past year of commit activity
    Python 0 MIT 1 5 0 Updated Sep 17, 2026
  • biodata-schema Public

    Complete and accurate metadata for neuroscience

    AllenNeuralDynamics/biodata-schema's past year of commit activity
    Python 0 MIT 0 55 1 Updated Sep 16, 2026
  • voxel Public

    General purpose microscope control repository.

    AllenNeuralDynamics/voxel's past year of commit activity
    Python 3 MIT 0 0 0 Updated Sep 16, 2026
  • data-curation-aind-analysis-wrapper Public Forked from AllenNeuralDynamics/aind-analysis-wrapper-template

    Rachel's capsule for data-curation. This serves a wrapper for running analysis functions on input data

    AllenNeuralDynamics/data-curation-aind-analysis-wrapper's past year of commit activity
    Jupyter Notebook 0 MIT 4 0 0 Updated Sep 16, 2026
  • dynamic-foraging-processing Public

    A library for processing dynamic foraging behavior data acquired on the new acquisition standard

    AllenNeuralDynamics/dynamic-foraging-processing's past year of commit activity
    Python 0 MIT 0 7 5 Updated Sep 16, 2026
  • aind-metadata-manager Public

    Metadata manager for pipeline to ensure metadata are in derived assets

    AllenNeuralDynamics/aind-metadata-manager's past year of commit activity
    Python 0 MIT 0 6 7 Updated Sep 16, 2026
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging's past year of commit activity
    C# 0 MIT 0 26 3 Updated Sep 16, 2026