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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 398 163

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 511 repositories
  • MultiTaskMPN Public
    AllenInstitute/MultiTaskMPN's past year of commit activity
    Python 2 2 0 0 Updated Sep 17, 2026
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access's past year of commit activity
    Jupyter Notebook 121 41 21 6 Updated Sep 17, 2026
  • pertpy Public Forked from scverse/pertpy

    Perturbation Analysis in the scverse ecosystem.

    AllenInstitute/pertpy's past year of commit activity
    Python 0 MIT 67 0 0 Updated Sep 17, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 21 BSD-3-Clause 10 60 6 Updated Sep 17, 2026
  • zarr-vectors-tools Public

    Tools and workflows based on the zarr-vectors-py API.

    AllenInstitute/zarr-vectors-tools's past year of commit activity
    Python 6 2 1 0 Updated Sep 17, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 30 11 287 4 Updated Sep 17, 2026
  • ConnectsCommonConnectivity Public

    A repository to organize data models and code for creating a pilot common connectivity matrix for BRAIN CONNECTS

    AllenInstitute/ConnectsCommonConnectivity's past year of commit activity
    Jupyter Notebook 4 MIT 1 29 (1 issue needs help) 2 Updated Sep 17, 2026
  • CCF-MAP Public

    Primer and examples for using templates and atlases in HMBA/BICAN

    AllenInstitute/CCF-MAP's past year of commit activity
    HTML 1 0 0 0 Updated Sep 17, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims's past year of commit activity
    Python 0 MIT 1 4 0 Updated Sep 16, 2026
  • bmtk Public

    Brain Modeling Toolkit

    AllenInstitute/bmtk's past year of commit activity
    Python 335 BSD-3-Clause 102 68 9 Updated Sep 16, 2026
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