diff --git a/README.md b/README.md index 6f3acd6..827272e 100644 --- a/README.md +++ b/README.md @@ -156,7 +156,7 @@ item can be highlighted in the original advisory. | 1 · Feasibility | Pinned ingestion, corpus statistics, label schema, offset-preserving preprocessing, pilot sample, annotation tooling | ✅ built | | 1 · Pilot | 100-document pilot (`pilot-2`: 22 hand-labelled, 78 from model drafts), [decision gate](docs/pilot_gate.md), guidelines v0.2 frozen, [acceptance targets](docs/targets.md) declared | ✅ done | | 2 · Baselines | Rules baseline, CRF + logistic-regression attributes and groups, evaluator with bootstrap CIs, evidence viewer | ✅ built · preliminary pilot dev scores | -| 3 · Neural models | Frozen leakage-safe splits, annotation batches (01–03, 06: model-drafted), DistilBERT and DeBERTa-v3 with span / role / group heads, experiment runner | 🟨 trained on model drafts (run 3) · DeBERTa ≈ CRF on held-out agreement, no clear winner | +| 3 · Neural models | Frozen leakage-safe splits, annotation batches (01–03, 06: model-drafted), DistilBERT and DeBERTa-v3 with span / role / group heads, experiment runner, CRF ablations and learning curve | 🟨 trained on model drafts (run 3) · DeBERTa ≈ CRF on held-out agreement, no clear winner | | 4 · Reliability | Calibration and review policy, formatting robustness (rules: 100%), challenge-set and error-catalogue tooling | 🟨 tooling ready · thresholds await labels | | 5 · Application | FastAPI API, review UI, SQLite (WAL) with append-only history, exports, Docker Compose stack, release manifests, tested rollback, CI image smoke test | ✅ built | | 6 · Production | Benchmark harness, ONNX/INT8 export (FP32 parity exact), local proxy benchmarks and load tests, monitoring; target-host numbers and hosted release pending | 🟨 harness and proxy results | @@ -217,6 +217,12 @@ to three times as many agreeing conditions. Its held-out typed F1 is clearly hig clearly different, and its false-prerequisite rate is higher at every target (not clearly). The CRF therefore stays the default model; see [`reports/calibration/`](reports/calibration/README.md). +**Ablations and learning curve (CRF).** On the 172 agreement records, removing the heading/list +context features (−0.006 typed F1 [−0.027, +0.020]) or the part-of-speech features (+0.002 +[−0.025, +0.032]) makes no clear difference. Typed agreement rises from 0.054 with 30 training +documents to 0.143 with 120, then stays flat (0.145 with all 239); span agreement keeps rising +slowly. See [`reports/crf-ablations/`](reports/crf-ablations/README.md). + 95% project-group bootstrap intervals (1,000 resamples). Full reports, including scores against the 28 model-made dev records (which measure agreement with the drafting model, not accuracy), are in [`reports/pilot/`](reports/pilot/README.md). The paired difference from adding `batch-01` (+0.214 typed F1, diff --git a/configs/experiments/crf-ablations.toml b/configs/experiments/crf-ablations.toml new file mode 100644 index 0000000..314ed66 --- /dev/null +++ b/configs/experiments/crf-ablations.toml @@ -0,0 +1,82 @@ +# CRF ablations and learning curve, one factor at a time. The CRF is deterministic for a +# fixed training set, so the full-data variants run once; each budget below the full train +# split draws three seeded random subsets. +# bash scripts/experiments/crf_ablations.sh +# Dev records only measure; nothing here is fitted or selected on them. + +[train] +family = "crf" +model_id = "crf-abl" +use_pos = true +use_context = true + +[[runs]] +name = "full" + +[[runs]] +name = "no-context" # heading, list and lead-in features removed +use_context = false + +[[runs]] +name = "no-pos" # spaCy part-of-speech features removed +use_pos = false + +[[runs]] +name = "docs30-seed0" +max_train_documents = 30 +seed = 0 + +[[runs]] +name = "docs30-seed1" +max_train_documents = 30 +seed = 1 + +[[runs]] +name = "docs30-seed2" +max_train_documents = 30 +seed = 2 + +[[runs]] +name = "docs60-seed0" +max_train_documents = 60 +seed = 0 + +[[runs]] +name = "docs60-seed1" +max_train_documents = 60 +seed = 1 + +[[runs]] +name = "docs60-seed2" +max_train_documents = 60 +seed = 2 + +[[runs]] +name = "docs120-seed0" +max_train_documents = 120 +seed = 0 + +[[runs]] +name = "docs120-seed1" +max_train_documents = 120 +seed = 1 + +[[runs]] +name = "docs120-seed2" +max_train_documents = 120 +seed = 2 + +[[runs]] +name = "docs180-seed0" +max_train_documents = 180 +seed = 0 + +[[runs]] +name = "docs180-seed1" +max_train_documents = 180 +seed = 1 + +[[runs]] +name = "docs180-seed2" +max_train_documents = 180 +seed = 2 diff --git a/docs/model_card.md b/docs/model_card.md index a6c760d..f4dd875 100644 --- a/docs/model_card.md +++ b/docs/model_card.md @@ -134,6 +134,17 @@ The default model is therefore still the CRF. The live review policy stays `review-policy-0` (uncalibrated: every prediction is flagged), because thresholds fitted on model drafts measure agreement, not accuracy. +## Ablations and learning curve + +Measured on the CRF, as agreement with the 172 model-drafted dev records +([`reports/crf-ablations/`](../reports/crf-ablations/README.md)): +- **Context and part-of-speech features:** removing either makes no clear difference (typed F1 + −0.006 [−0.027, +0.020] and +0.002 [−0.025, +0.032]). +- **Learning curve:** typed agreement rises from 0.054 with 30 training documents to 0.143 with + 120, then stays flat at about 0.14. Span agreement keeps rising slowly. + +The group-objective ablation and transformer learning curves need a GPU and have not been run. + ## Release process - **Thresholds.** Review thresholds and confidence cut-offs are chosen on the dev calibration diff --git a/reports/crf-ablations/README.md b/reports/crf-ablations/README.md new file mode 100644 index 0000000..afa9b05 --- /dev/null +++ b/reports/crf-ablations/README.md @@ -0,0 +1,91 @@ +# CRF ablations and learning curve (2026-11-07) + +How much each feature group and each extra training document contributes to the CRF behind +the v0.1.0 preview (`crf-batches-01-02`). The runs are in +[`configs/experiments/crf-ablations.toml`](../../configs/experiments/crf-ablations.toml) and are +run by [`scripts/experiments/crf_ablations.sh`](../../scripts/experiments/crf_ablations.sh). + +- **Training data:** the train split of `pilot-2`, `batch-01` and `batch-02` (239 documents: 7 + `manual`, 232 model drafts), the released model's training set. +- **Scored on:** the 172 model-drafted dev records (`batch-03` + `batch-06`). These scores are + **agreement with the drafting model, not accuracy**. The CRF is not tuned or selected on + them; every run here is a measurement. +- **Also scored on:** the 10 hand-labelled dev documents of `pilot-2`, for the ablations. +- **Untouched:** the test split. +- **Reproducible:** the full-data run reproduces the released model exactly. All 272 of its + predictions equal those of `crf-batches-01-02` in + [`reports/agreement/predictions/`](../agreement/predictions/), apart from the model id. + +95% project-group bootstrap intervals, 1,000 resamples. + +## Ablations + +One factor removed at a time, on all 239 training documents: +- **`no-context`** drops the heading, list-level and lead-in features from the tagger and the + attribute classifiers, and the list and lead-in features from the group classifier. +- **`no-pos`** drops the spaCy part-of-speech features. + +| Run | Typed F1 | Exact span F1 | Role macro-F1 | False-prerequisite rate | Training seconds | +|---|---:|---:|---:|---:|---:| +| full | 0.145 [0.104, 0.186] | 0.221 [0.169, 0.268] | 0.115 [0.066, 0.161] | 0.353 [0.268, 0.417] | 22 | +| no-context | 0.139 [0.101, 0.178] | 0.203 [0.160, 0.242] | 0.114 [0.061, 0.172] | 0.377 [0.298, 0.436] | 19 | +| no-pos | 0.147 [0.110, 0.188] | 0.217 [0.168, 0.259] | 0.121 [0.069, 0.177] | 0.331 [0.228, 0.410] | 8 | + +Paired differences against the full model (B − A): + +| B | Slice | Typed F1 | Exact span F1 | False-prerequisite rate (lower is better) | +|---|---|---:|---:|---:| +| no-context | agreement (172) | −0.006 [−0.027, +0.020] | −0.018 [−0.044, +0.011] | +0.024 [−0.030, +0.073] | +| no-pos | agreement (172) | +0.002 [−0.025, +0.032] | −0.004 [−0.035, +0.031] | −0.022 [−0.089, +0.024] | +| no-context | hand-labelled (10) | +0.030 [+0.000, +0.095] | +0.030 [+0.000, +0.095] | −0.048 [−0.500, +0.068] | +| no-pos | hand-labelled (10) | +0.000 [+0.000, +0.000] | +0.000 [+0.000, +0.000] | +0.000 [+0.000, +0.000] | + +None of these differences is clear. Full reports: `compare_agreement_*.md` and +`compare_manual_*.md`. + +## Learning curve + +Seeded random subsets of the 239 training documents, three subsets per budget. Mean ± SD +across the three subsets. The CRF is deterministic for a fixed training set, so the +239-document point is a single run. + +| Training documents | Typed F1 | Exact span F1 | Role macro-F1 | False-prerequisite rate | +|---:|---:|---:|---:|---:| +| 30 | 0.054 ± 0.006 | 0.099 ± 0.007 | 0.027 ± 0.009 | 0.465 ± 0.084 | +| 60 | 0.094 ± 0.017 | 0.143 ± 0.007 | 0.061 ± 0.028 | 0.386 ± 0.055 | +| 120 | 0.143 ± 0.008 | 0.194 ± 0.006 | 0.088 ± 0.023 | 0.375 ± 0.042 | +| 180 | 0.140 ± 0.010 | 0.209 ± 0.008 | 0.108 ± 0.006 | 0.364 ± 0.034 | +| 239 | 0.145 | 0.221 | 0.115 | 0.353 | + +Every run, with intervals, is in [`experiment.md`](experiment.md). + +## Reading + +- **Heading and list context adds nothing measurable to the CRF.** Removing it lowers span + agreement by 0.018, with an interval across zero. The group classifier, where list context + should matter most, matches no model-drafted group in any run (group F1 0.000). +- **Part-of-speech features add nothing measurable either,** and they cost the most. Without + them training is about three times faster and needs no spaCy model. On the 10 hand-labelled + documents the two models' predictions score identically. This makes dropping spaCy from the + CRF a candidate simplification. It is not applied here: the released model stays as it is. +- **Typed agreement stops rising at about 120 documents.** It climbs from 0.054 (30 documents) + to 0.143 (120), then stays flat (0.140 at 180, 0.145 at 239). Span agreement and role + macro-F1 keep rising slowly, and the false-prerequisite rate keeps falling slowly. More + model-drafted documents of the same kind are therefore unlikely to move the CRF's typed + agreement much. The limit is the attribute classifiers (category and role), not the number of + spans. +- **The group-objective ablation does not apply to the CRF.** Its group classifier is separate + and predicts no matching group. That ablation is planned for the transformer + (`configs/experiments/ablations.toml`), which needs a GPU. + +Every number here is agreement with model drafts or a 10-document slice; neither is a release +result. + +## Reproduce + +```bash +bash scripts/experiments/crf_ablations.sh # 15 trainings, a few minutes on a laptop +``` + +Bundles go to `artifacts/experiments/crf-ablations/` (not committed). The predictions of the +three full-data runs are committed in `predictions/`. diff --git a/reports/crf-ablations/compare_agreement_no-context.md b/reports/crf-ablations/compare_agreement_no-context.md new file mode 100644 index 0000000..9b955ba --- /dev/null +++ b/reports/crf-ablations/compare_agreement_no-context.md @@ -0,0 +1,25 @@ +# Agreement (172 model-drafted dev records): full -> no-context + +- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents) +- Baseline (A): `reports/crf-ablations/predictions/crf-abl-full.jsonl` (crf-abl-full) +- Candidate (B): `reports/crf-ablations/predictions/crf-abl-no-context.jsonl` (crf-abl-no-context) +- Bootstrap: 1000 paired resamples, project clusters, seed 0 +- Documents: 172 + +Differences are B minus A with 95% paired bootstrap intervals. *Clear* means the whole interval lies on one side of zero. + +| Metric | A (crf-abl-full) | B (crf-abl-no-context) | B - A | 95% CI | Verdict | +|---|---:|---:|---:|:---:|---| +| Typed condition micro-F1 (span + category + role) | 0.145 | 0.139 | -0.006 | [-0.027, +0.020] | no clear difference | +| Exact span F1 | 0.221 | 0.203 | -0.018 | [-0.044, +0.011] | no clear difference | +| Exact span precision | 0.332 | 0.326 | -0.006 | [-0.048, +0.050] | no clear difference | +| Exact span recall | 0.166 | 0.148 | -0.018 | [-0.040, +0.003] | no clear difference | +| Role macro-F1 (roles with gold support) | 0.115 | 0.114 | -0.000 | [-0.011, +0.017] | no clear difference | +| Category macro-F1 | 0.137 | 0.122 | -0.015 | [-0.038, +0.007] | no clear difference | +| Group exact-match F1 | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Complete-document exact match, documents with conditions | 0.065 | 0.045 | -0.019 | [-0.043, +0.000] | no clear difference | +| Complete-document exact match, documents without conditions | 0.882 | 1.000 | +0.118 | [+0.000, +0.286] | no clear difference | +| False prerequisite rate (lower is better) | 0.353 | 0.377 | +0.024 | [-0.030, +0.073] | no clear difference | +| Reversed meaning rate (lower is better) | 0.074 | 0.064 | -0.010 | [-0.039, +0.009] | no clear difference | +| Category accuracy on exactly matched spans | 0.797 | 0.807 | +0.010 | [-0.055, +0.098] | no clear difference | +| Role accuracy on exactly matched spans | 0.859 | 0.860 | +0.000 | [-0.051, +0.044] | no clear difference | diff --git a/reports/crf-ablations/compare_agreement_no-pos.md b/reports/crf-ablations/compare_agreement_no-pos.md new file mode 100644 index 0000000..0717bfa --- /dev/null +++ b/reports/crf-ablations/compare_agreement_no-pos.md @@ -0,0 +1,25 @@ +# Agreement (172 model-drafted dev records): full -> no-pos + +- Gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl` (dev split of `splits/pool-v1.json`; origin: all; 172 documents) +- Baseline (A): `reports/crf-ablations/predictions/crf-abl-full.jsonl` (crf-abl-full) +- Candidate (B): `reports/crf-ablations/predictions/crf-abl-no-pos.jsonl` (crf-abl-no-pos) +- Bootstrap: 1000 paired resamples, project clusters, seed 0 +- Documents: 172 + +Differences are B minus A with 95% paired bootstrap intervals. *Clear* means the whole interval lies on one side of zero. + +| Metric | A (crf-abl-full) | B (crf-abl-no-pos) | B - A | 95% CI | Verdict | +|---|---:|---:|---:|:---:|---| +| Typed condition micro-F1 (span + category + role) | 0.145 | 0.147 | +0.002 | [-0.025, +0.032] | no clear difference | +| Exact span F1 | 0.221 | 0.217 | -0.004 | [-0.035, +0.031] | no clear difference | +| Exact span precision | 0.332 | 0.333 | +0.002 | [-0.046, +0.070] | no clear difference | +| Exact span recall | 0.166 | 0.161 | -0.005 | [-0.030, +0.022] | no clear difference | +| Role macro-F1 (roles with gold support) | 0.115 | 0.121 | +0.006 | [-0.015, +0.035] | no clear difference | +| Category macro-F1 | 0.137 | 0.140 | +0.003 | [-0.021, +0.031] | no clear difference | +| Group exact-match F1 | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Complete-document exact match, documents with conditions | 0.065 | 0.045 | -0.019 | [-0.041, +0.000] | no clear difference | +| Complete-document exact match, documents without conditions | 0.882 | 1.000 | +0.118 | [+0.000, +0.286] | no clear difference | +| False prerequisite rate (lower is better) | 0.353 | 0.331 | -0.022 | [-0.089, +0.024] | no clear difference | +| Reversed meaning rate (lower is better) | 0.074 | 0.085 | +0.011 | [-0.037, +0.054] | no clear difference | +| Category accuracy on exactly matched spans | 0.797 | 0.806 | +0.010 | [-0.058, +0.097] | no clear difference | +| Role accuracy on exactly matched spans | 0.859 | 0.871 | +0.012 | [-0.009, +0.036] | no clear difference | diff --git a/reports/crf-ablations/compare_manual_no-context.md b/reports/crf-ablations/compare_manual_no-context.md new file mode 100644 index 0000000..3cf2fb8 --- /dev/null +++ b/reports/crf-ablations/compare_manual_no-context.md @@ -0,0 +1,25 @@ +# Hand-labelled dev (10): full -> no-context + +- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents) +- Baseline (A): `reports/crf-ablations/predictions/crf-abl-full.jsonl` (crf-abl-full) +- Candidate (B): `reports/crf-ablations/predictions/crf-abl-no-context.jsonl` (crf-abl-no-context) +- Bootstrap: 1000 paired resamples, project clusters, seed 0 +- Documents: 10 + +Differences are B minus A with 95% paired bootstrap intervals. *Clear* means the whole interval lies on one side of zero. + +| Metric | A (crf-abl-full) | B (crf-abl-no-context) | B - A | 95% CI | Verdict | +|---|---:|---:|---:|:---:|---| +| Typed condition micro-F1 (span + category + role) | 0.370 | 0.400 | +0.030 | [+0.000, +0.095] | no clear difference | +| Exact span F1 | 0.370 | 0.400 | +0.030 | [+0.000, +0.095] | no clear difference | +| Exact span precision | 0.500 | 0.625 | +0.125 | [+0.000, +0.379] | no clear difference | +| Exact span recall | 0.294 | 0.294 | +0.000 | [+0.000, +0.000] | no clear difference | +| Role macro-F1 (roles with gold support) | 0.200 | 0.217 | +0.017 | [+0.000, +0.066] | no clear difference | +| Category macro-F1 | 0.237 | 0.232 | -0.004 | [-0.083, +0.047] | no clear difference | +| Group exact-match F1 | 0.500 | 0.500 | +0.000 | [+0.000, +0.000] | no clear difference | +| Complete-document exact match, documents with conditions | 0.222 | 0.222 | +0.000 | [+0.000, +0.000] | no clear difference | +| Complete-document exact match, documents without conditions | 1.000 | 1.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| False prerequisite rate (lower is better) | 0.333 | 0.286 | -0.048 | [-0.500, +0.068] | no clear difference | +| Reversed meaning rate (lower is better) | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Category accuracy on exactly matched spans | 1.000 | 1.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Role accuracy on exactly matched spans | 1.000 | 1.000 | +0.000 | [+0.000, +0.000] | no clear difference | diff --git a/reports/crf-ablations/compare_manual_no-pos.md b/reports/crf-ablations/compare_manual_no-pos.md new file mode 100644 index 0000000..a3eb728 --- /dev/null +++ b/reports/crf-ablations/compare_manual_no-pos.md @@ -0,0 +1,25 @@ +# Hand-labelled dev (10): full -> no-pos + +- Gold: `annotations/pilot/pilot-2.jsonl` (dev split of `splits/pool-v1.json`; origin: manual; 10 documents) +- Baseline (A): `reports/crf-ablations/predictions/crf-abl-full.jsonl` (crf-abl-full) +- Candidate (B): `reports/crf-ablations/predictions/crf-abl-no-pos.jsonl` (crf-abl-no-pos) +- Bootstrap: 1000 paired resamples, project clusters, seed 0 +- Documents: 10 + +Differences are B minus A with 95% paired bootstrap intervals. *Clear* means the whole interval lies on one side of zero. + +| Metric | A (crf-abl-full) | B (crf-abl-no-pos) | B - A | 95% CI | Verdict | +|---|---:|---:|---:|:---:|---| +| Typed condition micro-F1 (span + category + role) | 0.370 | 0.370 | +0.000 | [+0.000, +0.000] | no clear difference | +| Exact span F1 | 0.370 | 0.370 | +0.000 | [+0.000, +0.000] | no clear difference | +| Exact span precision | 0.500 | 0.500 | +0.000 | [+0.000, +0.000] | no clear difference | +| Exact span recall | 0.294 | 0.294 | +0.000 | [+0.000, +0.000] | no clear difference | +| Role macro-F1 (roles with gold support) | 0.200 | 0.200 | +0.000 | [+0.000, +0.000] | no clear difference | +| Category macro-F1 | 0.237 | 0.237 | +0.000 | [+0.000, +0.000] | no clear difference | +| Group exact-match F1 | 0.500 | 0.500 | +0.000 | [+0.000, +0.000] | no clear difference | +| Complete-document exact match, documents with conditions | 0.222 | 0.222 | +0.000 | [+0.000, +0.000] | no clear difference | +| Complete-document exact match, documents without conditions | 1.000 | 1.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| False prerequisite rate (lower is better) | 0.333 | 0.333 | +0.000 | [+0.000, +0.000] | no clear difference | +| Reversed meaning rate (lower is better) | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Category accuracy on exactly matched spans | 1.000 | 1.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Role accuracy on exactly matched spans | 1.000 | 1.000 | +0.000 | [+0.000, +0.000] | no clear difference | diff --git a/reports/crf-ablations/experiment.md b/reports/crf-ablations/experiment.md new file mode 100644 index 0000000..820911b --- /dev/null +++ b/reports/crf-ablations/experiment.md @@ -0,0 +1,38 @@ +# Experiment: crf-ablations + +- Config: `configs/experiments/crf-ablations.toml` +- Gold: 3 file(s): 239 train docs +- Dev gold: `annotations/batches/batch-03.jsonl`, `annotations/batches/batch-06.jsonl`: 172 dev docs (this table) +- Split: `splits/pool-v1.json` (41d7354e1a13) + +## Runs (dev split, 95% leakage-group bootstrap intervals) + +| Run | Docs | Typed F1 | Span F1 | Role macro-F1 | Group F1 | False prereq. | Best epoch | Seconds | +|---|---:|---:|---:|---:|---:|---:|---:|---:| +| crf-abl-full | 239 | 0.145 [0.104, 0.186] | 0.221 [0.169, 0.268] | 0.115 [0.066, 0.161] | 0.000 [0.000, 0.000] | 0.353 [0.268, 0.417] | n/a | 22 | +| crf-abl-no-context | 239 | 0.139 [0.101, 0.178] | 0.203 [0.160, 0.242] | 0.114 [0.061, 0.172] | 0.000 [0.000, 0.000] | 0.377 [0.298, 0.436] | n/a | 19 | +| crf-abl-no-pos | 239 | 0.147 [0.110, 0.188] | 0.217 [0.168, 0.259] | 0.121 [0.069, 0.177] | 0.000 [0.000, 0.000] | 0.331 [0.228, 0.410] | n/a | 8 | +| crf-abl-docs30-seed0 | 30 | 0.049 [0.023, 0.080] | 0.091 [0.061, 0.125] | 0.020 [0.011, 0.030] | 0.000 [0.000, 0.000] | 0.556 [0.450, 0.638] | n/a | 2 | +| crf-abl-docs30-seed1 | 30 | 0.061 [0.033, 0.091] | 0.101 [0.067, 0.136] | 0.038 [0.018, 0.064] | 0.000 [0.000, 0.000] | 0.447 [0.345, 0.533] | n/a | 3 | +| crf-abl-docs30-seed2 | 30 | 0.052 [0.025, 0.083] | 0.104 [0.066, 0.143] | 0.024 [0.014, 0.036] | 0.000 [0.000, 0.000] | 0.391 [0.283, 0.471] | n/a | 3 | +| crf-abl-docs60-seed0 | 60 | 0.080 [0.044, 0.120] | 0.144 [0.105, 0.185] | 0.034 [0.020, 0.047] | 0.000 [0.000, 0.000] | 0.423 [0.295, 0.527] | n/a | 4 | +| crf-abl-docs60-seed1 | 60 | 0.113 [0.082, 0.149] | 0.149 [0.111, 0.186] | 0.060 [0.031, 0.102] | 0.000 [0.000, 0.000] | 0.413 [0.327, 0.480] | n/a | 5 | +| crf-abl-docs60-seed2 | 60 | 0.089 [0.050, 0.128] | 0.136 [0.088, 0.180] | 0.090 [0.026, 0.152] | 0.000 [0.000, 0.000] | 0.323 [0.235, 0.412] | n/a | 6 | +| crf-abl-docs120-seed0 | 120 | 0.134 [0.096, 0.170] | 0.190 [0.149, 0.228] | 0.067 [0.039, 0.107] | 0.000 [0.000, 0.000] | 0.401 [0.303, 0.476] | n/a | 9 | +| crf-abl-docs120-seed1 | 120 | 0.147 [0.113, 0.186] | 0.201 [0.151, 0.248] | 0.084 [0.045, 0.125] | 0.000 [0.000, 0.000] | 0.397 [0.296, 0.459] | n/a | 12 | +| crf-abl-docs120-seed2 | 120 | 0.148 [0.107, 0.187] | 0.191 [0.141, 0.239] | 0.113 [0.060, 0.159] | 0.000 [0.000, 0.000] | 0.326 [0.255, 0.388] | n/a | 10 | +| crf-abl-docs180-seed0 | 180 | 0.132 [0.098, 0.169] | 0.205 [0.166, 0.245] | 0.101 [0.051, 0.147] | 0.000 [0.000, 0.000] | 0.364 [0.274, 0.428] | n/a | 14 | +| crf-abl-docs180-seed1 | 180 | 0.138 [0.100, 0.177] | 0.203 [0.163, 0.243] | 0.113 [0.061, 0.159] | 0.000 [0.000, 0.000] | 0.398 [0.310, 0.457] | n/a | 15 | +| crf-abl-docs180-seed2 | 180 | 0.151 [0.107, 0.201] | 0.218 [0.174, 0.267] | 0.110 [0.065, 0.157] | 0.000 [0.000, 0.000] | 0.331 [0.243, 0.404] | n/a | 13 | + +## Across seeds (typed F1) + +| Variant | Seeds | Mean | SD | +|---|---:|---:|---:| +| crf-abl-full | 1 | 0.145 | 0.000 | +| crf-abl-no-context | 1 | 0.139 | 0.000 | +| crf-abl-no-pos | 1 | 0.147 | 0.000 | +| crf-abl-docs30 | 3 | 0.054 | 0.006 | +| crf-abl-docs60 | 3 | 0.094 | 0.017 | +| crf-abl-docs120 | 3 | 0.143 | 0.008 | +| crf-abl-docs180 | 3 | 0.140 | 0.010 | diff --git a/reports/crf-ablations/predictions/crf-abl-full.jsonl b/reports/crf-ablations/predictions/crf-abl-full.jsonl new file mode 100644 index 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index 0000000..d4bcae2 --- /dev/null +++ b/scripts/experiments/crf_ablations.sh @@ -0,0 +1,41 @@ +#!/usr/bin/env bash +# CRF ablations (no heading/list context, no part of speech) and learning curve. +# +# bash scripts/experiments/crf_ablations.sh +# +# Trains every run of configs/experiments/crf-ablations.toml on the train split of pilot-2, +# batch-01 and batch-02 (the training set of the released crf-batches-01-02). It scores each +# run on the 172 model-drafted dev records (batch-03 + batch-06), then compares the full model +# with each ablation, pairwise, on those records and on the 10 hand-labelled dev documents. +# Nothing is fitted or selected on dev, and the test split is not touched. Scores against +# model drafts are agreement with the drafting model, not accuracy. +set -euo pipefail +[ -f pyproject.toml ] && [ -d annotations ] || { echo "run from the repository root" >&2; exit 1; } + +TM=(uv run --no-sync triggermap) +TRAIN=(annotations/pilot/pilot-2.jsonl annotations/batches/batch-01.jsonl annotations/batches/batch-02.jsonl) +DEV=(annotations/batches/batch-03.jsonl annotations/batches/batch-06.jsonl) +SAMPLES=(annotations/pilot/pilot_manifest.json annotations/batches/batch-03.json annotations/batches/batch-06.json) +RUNS=artifacts/experiments/crf-ablations +OUT=reports/crf-ablations +mkdir -p "$OUT/predictions" + +"${TM[@]}" experiment --config configs/experiments/crf-ablations.toml --gold "${TRAIN[@]}" \ + --dev-gold "${DEV[@]}" --out-root "$RUNS" --report "$OUT/experiment.md" + +for run in full no-context no-pos; do + "${TM[@]}" predict --model crf --model-dir "$RUNS/crf-abl-$run" --sample "${SAMPLES[@]}" \ + --out "$OUT/predictions/crf-abl-$run.jsonl" +done + +for run in no-context no-pos; do + a="$OUT/predictions/crf-abl-full.jsonl" + b="$OUT/predictions/crf-abl-$run.jsonl" + "${TM[@]}" compare "${DEV[0]}" "$a" "$b" --add-gold "${DEV[1]}" --split dev \ + --title "Agreement (172 model-drafted dev records): full -> $run" \ + --out "$OUT/compare_agreement_$run.md" >/dev/null + "${TM[@]}" compare annotations/pilot/pilot-2.jsonl "$a" "$b" --split dev --gold-origin manual \ + --title "Hand-labelled dev (10): full -> $run" \ + --out "$OUT/compare_manual_$run.md" >/dev/null +done +ls "$OUT" diff --git a/src/triggermap/cli.py b/src/triggermap/cli.py index 730f32e..739aea4 100644 --- a/src/triggermap/cli.py +++ b/src/triggermap/cli.py @@ -501,6 +501,8 @@ def _train(args: argparse.Namespace) -> int: args.out, model_id=args.model_id, use_pos=not args.no_pos, + use_context=not args.no_context, + max_train_documents=args.max_train_documents, seed=args.seed or 0, ) print(json.dumps(model.metadata["stats"], indent=2)) @@ -523,8 +525,8 @@ def _experiment(args: argparse.Namespace) -> int: return 0 from triggermap.corpus.splits import load_split - from triggermap.models.transformer.train import TrainConfig, train + family = config["train"].get("family", "transformer") split = load_split(args.split_manifest) examples = _gold_examples(args.gold, args.processed, args.split_manifest, origins=args.origin) dev = _gold_examples( @@ -537,16 +539,12 @@ def _experiment(args: argparse.Namespace) -> int: if not examples or not dev: raise SystemExit("experiments need gold documents in both the train and dev splits") results = [] - from triggermap.models.transformer.extractor import TransformerExtractor - for run in runs: bundle = args.out_root / run.name - if (bundle / "metadata.json").exists(): # resume: finished runs are not retrained - extractor = TransformerExtractor.load(bundle) - print(f"{run.name}: reusing existing bundle") + if family == "crf": + extractor: Any = _experiment_crf(run.settings, examples, bundle) else: - settings = {**run.settings, "split_assignment_sha256": split["assignment_sha256"]} - extractor = train(TrainConfig(**settings), examples, dev, bundle) + extractor = _experiment_transformer(run.settings, examples, dev, bundle, split) intervals = evaluate_run(extractor, dev, split["group_of"], args.samples) results.append(RunResult(run, intervals, extractor.metadata)) print(f"{run.name}: dev typed F1 {intervals['typed_f1'].estimate:.3f}") @@ -561,7 +559,9 @@ def _experiment(args: argparse.Namespace) -> int: "Gold": f"{len(args.gold)} file(s): {len(examples)} train docs", "Dev gold": ", ".join(f"`{p}`" for p in (args.dev_gold or args.gold)) + (f", subset `{args.dev_subset}`" if args.dev_subset else "") - + f": {len(dev)} dev docs (early stopping and this table)", + + f": {len(dev)} dev docs (" + + ("this table" if family == "crf" else "early stopping and this table") + + ")", "Split": f"`{args.split_manifest}` ({split['assignment_sha256'][:12]})", }, ), @@ -571,6 +571,39 @@ def _experiment(args: argparse.Namespace) -> int: return 0 +def _experiment_transformer( + settings: dict[str, Any], + examples: Sequence[Any], + dev: Sequence[Any], + bundle: Path, + split: dict[str, Any], +) -> Any: + from triggermap.models.transformer.extractor import TransformerExtractor + from triggermap.models.transformer.train import TrainConfig, train + + if (bundle / "metadata.json").exists(): # resume: finished runs are not retrained + print(f"{bundle.name}: reusing existing bundle") + return TransformerExtractor.load(bundle) + settings = {**settings, "split_assignment_sha256": split["assignment_sha256"]} + return train(TrainConfig(**settings), examples, dev, bundle) + + +def _experiment_crf(settings: dict[str, Any], examples: Sequence[Any], bundle: Path) -> Any: + import time + + from triggermap.models.crf.model import CrfExtractor + from triggermap.models.experiment import crf_settings + + if (bundle / "metadata.json").exists(): # resume: finished runs are not retrained + print(f"{bundle.name}: reusing existing bundle") + return CrfExtractor.load(bundle) + started = time.monotonic() + model = CrfExtractor.train(examples, bundle, **crf_settings(settings)) + # Recorded for the report only; the bundle's own metadata stays deterministic. + model.metadata = {**model.metadata, "train_seconds": round(time.monotonic() - started)} + return model + + def _calibrate(args: argparse.Namespace) -> int: from triggermap.corpus.splits import load_split, select from triggermap.eval.calibration import ( @@ -1240,6 +1273,14 @@ def build_parser() -> argparse.ArgumentParser: train.add_argument("--split-manifest", type=Path, default=DEFAULT_SPLIT) train.add_argument("--model-id", default="crf-1") train.add_argument("--no-pos", action="store_true", help="skip spaCy part-of-speech features") + train.add_argument( + "--no-context", action="store_true", help="CRF ablation: no heading/list context features" + ) + train.add_argument( + "--max-train-documents", + type=int, + help="CRF learning curve: train on a random subset of this size (seeded by --seed)", + ) train.add_argument("--seed", type=int, help="overrides the config seed") train.add_argument( "--origin", @@ -1389,7 +1430,9 @@ def build_parser() -> argparse.ArgumentParser: challenge.add_argument("--out", type=Path) challenge.set_defaults(handler=_challenge) - experiment = commands.add_parser("experiment", help="run a grid of transformer trainings") + experiment = commands.add_parser( + "experiment", help="run a grid of trainings (transformer or CRF)" + ) experiment.add_argument("--config", type=Path, required=True) experiment.add_argument("--gold", type=Path, nargs="+", help="gold JSONL file(s)") _dev_gold_argument(experiment) diff --git a/src/triggermap/models/crf/features.py b/src/triggermap/models/crf/features.py index 633e98a..4a9f7ac 100644 --- a/src/triggermap/models/crf/features.py +++ b/src/triggermap/models/crf/features.py @@ -106,9 +106,11 @@ def token_features( tokens: Sequence[Token], ctx: SentenceContext, pos: Sequence[str] | None, + use_context: bool = True, ) -> list[Features]: + """Per-token features; ``use_context=False`` drops heading/list context (an ablation).""" lowered = [t.text.lower() for t in tokens] - context = _context_features(ctx) + context = _context_features(ctx) if use_context else {} last_cue: tuple[int, str] | None = None out: list[Features] = [] for i, tok in enumerate(tokens): @@ -160,7 +162,12 @@ def token_features( def span_features( - tokens: Sequence[Token], first: int, last: int, ctx: SentenceContext, in_code: bool + tokens: Sequence[Token], + first: int, + last: int, + ctx: SentenceContext, + in_code: bool, + use_context: bool = True, ) -> Features: """Features for the attribute classifiers; ``first``..``last`` inclusive token indices.""" lowered = [t.text.lower() for t in tokens] @@ -182,17 +189,28 @@ def span_features( feats["neg_before"] = 1.0 if in_code: feats["in_code"] = 1.0 - feats.update(_context_features(ctx)) + if use_context: + feats.update(_context_features(ctx)) return feats def pair_features( - text: str, a: tuple[int, int], b: tuple[int, int], same_list: bool, lead: str + text: str, + a: tuple[int, int], + b: tuple[int, int], + same_list: bool, + lead: str, + use_context: bool = True, ) -> Features: - """Features for whether two conditions (character spans, a before b) share a group.""" + """Features for whether two conditions (character spans, a before b) share a group. + + ``use_context=False`` drops the list and lead-in features (the context ablation). + """ between = text[a[1] : b[0]].lower() words = re.findall(r"[a-z/]+", between) - feats: Features = {"gap": _bucket(len(words)), "same_list": float(same_list)} + feats: Features = {"gap": _bucket(len(words))} + if use_context: + feats["same_list"] = float(same_list) for word in words[:6]: feats[f"between={word}"] = 1.0 for marker in ("and", "or", "and/or", "either", "both", "but", "while", "also"): @@ -200,7 +218,7 @@ def pair_features( feats[f"has={marker}"] = 1.0 if ";" in between: feats["semicolon"] = 1.0 - lead_low = lead.lower() + lead_low = lead.lower() if use_context else "" for marker in ("all of", "any of", "one of", "either", "following", "both", "combine"): if marker in lead_low: feats[f"lead={marker}"] = 1.0 diff --git a/src/triggermap/models/crf/model.py b/src/triggermap/models/crf/model.py index 6e179fd..fd90167 100644 --- a/src/triggermap/models/crf/model.py +++ b/src/triggermap/models/crf/model.py @@ -13,6 +13,7 @@ from __future__ import annotations import json +import random from collections import Counter from collections.abc import Sequence from dataclasses import dataclass @@ -92,7 +93,7 @@ class _Unit: features: list[Features] -def _units(doc: PreprocessedDocument, use_pos: bool) -> list[_Unit]: +def _units(doc: PreprocessedDocument, use_pos: bool, use_context: bool) -> list[_Unit]: units = [] for index, sentence in enumerate(doc.sentences): tokens = tokenize(doc.text, sentence.start, sentence.end) @@ -100,7 +101,8 @@ def _units(doc: PreprocessedDocument, use_pos: bool) -> list[_Unit]: continue ctx = sentence_context(doc, sentence) pos = pos_tags(doc.text, tokens, sentence.start) if use_pos else None - units.append(_Unit(index, tokens, ctx, token_features(doc, tokens, ctx, pos))) + feats = token_features(doc, tokens, ctx, pos, use_context) + units.append(_Unit(index, tokens, ctx, feats)) return units @@ -123,7 +125,7 @@ def _scope(doc: PreprocessedDocument, span: tuple[int, int]) -> tuple[str, int, def _pairs( - doc: PreprocessedDocument, spans: Sequence[tuple[int, int]] + doc: PreprocessedDocument, spans: Sequence[tuple[int, int]], use_context: bool ) -> list[tuple[int, int, Features]]: """Consecutive condition pairs that share a sentence or list, with their features.""" out: list[tuple[int, int, Features]] = [] @@ -131,7 +133,8 @@ def _pairs( for i in range(len(spans) - 1): a, b = scopes[i], scopes[i + 1] if a[0] != "none" and a[:2] == b[:2]: - feats = pair_features(doc.text, spans[i], spans[i + 1], a[0] == "list", a[2]) + same_list = a[0] == "list" + feats = pair_features(doc.text, spans[i], spans[i + 1], same_list, a[2], use_context) out.append((i, i + 1, feats)) return out @@ -149,6 +152,8 @@ def __init__( self.metadata = metadata self.model_id = str(metadata["model_id"]) self.use_pos = bool(metadata["use_pos"]) + # Bundles from before the context ablation always used context features. + self.use_context = bool(metadata.get("use_context", True)) self.category = category self.role = role self.group = group @@ -165,12 +170,23 @@ def train( *, model_id: str = "crf-1", use_pos: bool = True, + use_context: bool = True, + max_train_documents: int | None = None, c1: float = 0.1, c2: float = 0.1, max_iterations: int = 200, seed: int = 0, ) -> CrfExtractor: + """Train a bundle into ``out_dir``. + + ``use_context=False`` (ablation) drops heading/list context features; + ``max_train_documents`` (learning curves) trains on a seeded random subset. + """ out_dir.mkdir(parents=True, exist_ok=True) + if max_train_documents is not None: + examples = random.Random(seed).sample( + list(examples), min(max_train_documents, len(examples)) + ) trainer = pycrfsuite.Trainer(verbose=False) span_x: list[Features] = [] category_y: list[str] = [] @@ -184,7 +200,7 @@ def train( raise ValueError(f"{record.advisory_id}: annotation is for different text") conditions = sorted(record.conditions, key=lambda c: c.span) placed: set[str] = set() - for unit in _units(doc, use_pos): + for unit in _units(doc, use_pos, use_context): sentence = doc.sentences[unit.sentence_index] inside = [ c @@ -203,7 +219,9 @@ def train( if cond.span[0] in starts and cond.span[1] in ends: first, last = starts[cond.span[0]], ends[cond.span[1]] in_code = doc.canonical.in_code(cond.span[0]) - span_x.append(span_features(unit.tokens, first, last, unit.ctx, in_code)) + span_x.append( + span_features(unit.tokens, first, last, unit.ctx, in_code, use_context) + ) category_y.append(cond.category.value) role_y.append(cond.role.value) stats["gold_spans"] += len(conditions) @@ -211,7 +229,7 @@ def train( group_of = {m: g.operator.value for g in record.groups for m in g.members} group_index = {m: i for i, g in enumerate(record.groups) for m in g.members} - for i, j, feats in _pairs(doc, [c.span for c in conditions]): + for i, j, feats in _pairs(doc, [c.span for c in conditions], use_context): a, b = conditions[i].id, conditions[j].id same = a in group_index and group_index.get(a) == group_index.get(b) pair_x.append(feats) @@ -240,7 +258,14 @@ def train( "feature_version": FEATURE_VERSION, "preprocessing_version": PREPROCESSING_VERSION, "use_pos": use_pos, - "hyperparameters": {"c1": c1, "c2": c2, "max_iterations": max_iterations, "seed": seed}, + "use_context": use_context, + "hyperparameters": { + "c1": c1, + "c2": c2, + "max_iterations": max_iterations, + "seed": seed, + "max_train_documents": max_train_documents, + }, "training_documents": len(records), "training_hash": training_hash(records), "training_origins": training_origins(records), @@ -271,7 +296,7 @@ def load(cls, directory: Path) -> CrfExtractor: def extract(self, doc: PreprocessedDocument, advisory_id: str | None = None) -> Extraction: found: list[tuple[tuple[int, int], Features, float]] = [] - for unit in _units(doc, self.use_pos): + for unit in _units(doc, self.use_pos, self.use_context): tags = self._tagger.tag(unit.features) ranges = spans_from_tags(unit.tokens, tags) pieces = [p for r in ranges for p in split_at_lines(doc.text, unit.tokens, *r)] @@ -279,7 +304,9 @@ def extract(self, doc: PreprocessedDocument, advisory_id: str | None = None) -> marginals = [self._marginal(tags[i], i) for i in range(first, stop)] span = (unit.tokens[first].start, unit.tokens[stop - 1].end) in_code = doc.canonical.in_code(span[0]) - feats = span_features(unit.tokens, first, stop - 1, unit.ctx, in_code) + feats = span_features( + unit.tokens, first, stop - 1, unit.ctx, in_code, self.use_context + ) found.append((span, feats, min(marginals))) categories = self.category.predict([f for _, f, _ in found]) @@ -322,7 +349,7 @@ def _marginal(self, tag: str, index: int) -> float: return 0.0 def _groups(self, doc: PreprocessedDocument, conditions: Sequence[Condition]) -> list[Group]: - pairs = _pairs(doc, [c.span for c in conditions]) + pairs = _pairs(doc, [c.span for c in conditions], self.use_context) labels = self.group.predict([feats for _, _, feats in pairs]) chains: list[tuple[list[int], set[str]]] = [] for (i, j, _), (label, _) in zip(pairs, labels, strict=True): diff --git a/src/triggermap/models/experiment.py b/src/triggermap/models/experiment.py index 0db0e83..3471961 100644 --- a/src/triggermap/models/experiment.py +++ b/src/triggermap/models/experiment.py @@ -41,6 +41,21 @@ def plan(config: Mapping[str, Any]) -> list[PlannedRun]: return runs +CRF_SETTINGS = frozenset( + {"model_id", "use_pos", "use_context", "max_train_documents", "c1", "c2"} + | {"max_iterations", "seed"} +) + + +def crf_settings(settings: Mapping[str, Any]) -> dict[str, Any]: + """Keyword arguments for ``CrfExtractor.train`` from a ``family = "crf"`` run.""" + rest = {k: v for k, v in settings.items() if k != "family"} + unknown = sorted(set(rest) - CRF_SETTINGS) + if unknown: # typos in a config must fail, as TrainConfig does for transformers + raise ValueError(f"unknown CRF settings: {', '.join(unknown)}") + return rest + + @dataclass(frozen=True) class RunResult: run: PlannedRun @@ -68,6 +83,10 @@ def evaluate_run( ] +def _cell(value: Any) -> str: + return "n/a" if value is None else str(value) + + def render_report(title: str, results: Sequence[RunResult], context: Mapping[str, str]) -> str: lines = [f"# {title}", "", *(f"- {k}: {v}" for k, v in context.items()), ""] lines += [ @@ -85,7 +104,7 @@ def render_report(title: str, results: Sequence[RunResult], context: Mapping[str lines.append( f"| {result.run.name} | {meta['training_documents']} | " + " | ".join(cells) - + f" | {meta.get('best_epoch')} | {meta.get('train_seconds')} |" + + f" | {_cell(meta.get('best_epoch'))} | {_cell(meta.get('train_seconds'))} |" ) groups: dict[str, list[float]] = {} for result in results: diff --git a/tests/synthetic.py b/tests/synthetic.py index 078282c..ad521c5 100644 --- a/tests/synthetic.py +++ b/tests/synthetic.py @@ -43,7 +43,10 @@ Spec = tuple[str, Category, Role] _GHSA_ALPHABET = "23456789cfghjmpqrvwx" -_STREAMS = {"train": 0, "test": 1, "x": 2, "t": 3, "pos": 4, "cli": 5, "org": 6} +_STREAMS = { + "train": 0, "test": 1, "x": 2, "t": 3, "pos": 4, "cli": 5, "org": 6, + "ctx": 7, "lc": 8, "exp": 9, +} # fmt: skip def synthetic_id(prefix: str, index: int) -> str: diff --git a/tests/test_crf.py b/tests/test_crf.py index 2716c2c..c5f7ad1 100644 --- a/tests/test_crf.py +++ b/tests/test_crf.py @@ -161,3 +161,90 @@ def test_tagged_ranges_are_split_at_line_breaks() -> None: text[tokens[a].start : tokens[b - 1].end] for a, b in split_at_lines(text, tokens, 0, 7) ] assert pieces == ["uses the legacy API", "with debug enabled"] + + +def test_context_ablation_drops_context_features(tmp_path: Path) -> None: + from triggermap.models.crf.features import sentence_context, token_features + + data = make_dataset(12, TRAIN_VOCAB, seed=7, prefix="ctx") + _, pre, rec = data[0] + sentence = pre.sentences[0] + tokens = tokenize(pre.text, sentence.start, sentence.end) + ctx = sentence_context(pre, sentence) + assert "block" in token_features(pre, tokens, ctx, None)[0] + assert "block" not in token_features(pre, tokens, ctx, None, use_context=False)[0] + + model = CrfExtractor.train( + [(p, r) for _, p, r in data], tmp_path / "b", use_pos=False, use_context=False + ) + assert model.metadata["use_context"] is False + reloaded = CrfExtractor.load(model.directory) + assert reloaded.use_context is False + assert reloaded.extract(pre, rec.advisory_id) == model.extract(pre, rec.advisory_id) + + # Bundles written before the ablation existed have no use_context key: context was on. + meta = json.loads((model.directory / "metadata.json").read_text()) + del meta["use_context"] + (model.directory / "metadata.json").write_text(json.dumps(meta)) + assert CrfExtractor.load(model.directory).use_context is True + + +def test_training_budget_is_a_seeded_subset(tmp_path: Path) -> None: + examples = [(p, r) for _, p, r in make_dataset(20, TRAIN_VOCAB, seed=8, prefix="lc")] + + def hash_of(seed: int, name: str) -> str: + model = CrfExtractor.train( + examples, tmp_path / name, use_pos=False, max_train_documents=8, seed=seed + ) + assert model.metadata["training_documents"] == 8 + assert model.metadata["hyperparameters"]["max_train_documents"] == 8 + return str(model.metadata["training_hash"]) + + assert hash_of(0, "a") == hash_of(0, "b") + assert hash_of(0, "a") != hash_of(1, "c") + + +def test_crf_settings_reject_unknown_keys() -> None: + from triggermap.models.experiment import crf_settings + + settings = {"family": "crf", "model_id": "m", "use_context": False} + assert crf_settings(settings) == {"model_id": "m", "use_context": False} + with pytest.raises(ValueError, match="use_contxt"): + crf_settings({"model_id": "m", "use_contxt": False}) + + +def test_crf_experiment_cli(tmp_path: Path) -> None: + from tests.factories import write_split_manifest + from triggermap.cli import main + + data = make_dataset(24, TRAIN_VOCAB, seed=9, prefix="exp") + processed = tmp_path / "processed" + processed.mkdir() + (processed / "advisories.jsonl").write_text( + "".join(doc.model_dump_json() + "\n" for doc, _, _ in data) + ) + gold = tmp_path / "gold.jsonl" + gold.write_text("".join(rec.model_dump_json() + "\n" for _, _, rec in data)) + split = write_split_manifest( + tmp_path / "split.json", + {rec.advisory_id: ("train" if i < 16 else "dev") for i, (_, _, rec) in enumerate(data)}, + ) + config = tmp_path / "crf.toml" + config.write_text( + '[train]\nfamily = "crf"\nmodel_id = "c"\nuse_pos = false\n\n' + '[[runs]]\nname = "full"\n\n[[runs]]\nname = "no-context"\nuse_context = false\n\n' + '[[runs]]\nname = "docs8-seed0"\nmax_train_documents = 8\n' + ) + report = tmp_path / "report.md" + args = ["experiment", "--config", str(config), "--gold", str(gold), "--samples", "20"] + args += ["--out-root", str(tmp_path / "runs"), "--report", str(report)] + args += ["--processed", str(processed), "--split-manifest", str(split)] + assert main(args) == 0 + text = report.read_text() + assert "| c-full | 16 |" in text and "| c-docs8-seed0 | 8 |" in text + assert ( + json.loads((tmp_path / "runs/c-no-context/metadata.json").read_text())["use_context"] + is False + ) + assert "train_seconds" not in (tmp_path / "runs/c-full/metadata.json").read_text() + assert main(args) == 0 # resume reuses the bundles diff --git a/tests/test_transformer.py b/tests/test_transformer.py index da0e835..b4d3001 100644 --- a/tests/test_transformer.py +++ b/tests/test_transformer.py @@ -178,17 +178,21 @@ def test_ablations_train(base: Path, tmp_path: Path) -> None: def test_committed_experiment_configs_are_valid() -> None: import tomllib - from triggermap.models.experiment import plan + from triggermap.models.experiment import crf_settings, plan root = Path(__file__).resolve().parents[1] / "configs/experiments" counts = {} for path in sorted(root.glob("*.toml")): - runs = plan(tomllib.loads(path.read_text())) + config = tomllib.loads(path.read_text()) + runs = plan(config) for run in runs: - TrainConfig(**run.settings) # extra="forbid": typos fail here + if config["train"].get("family") == "crf": + crf_settings(run.settings) # unknown keys fail here + else: + TrainConfig(**run.settings) # extra="forbid": typos fail here assert len({r.name for r in runs}) == len(runs) counts[path.stem] = len(runs) - assert counts == {"ablations": 15, "deberta": 12, "distilbert": 12} + assert counts == {"ablations": 15, "crf-ablations": 15, "deberta": 12, "distilbert": 12} def test_bio_weighting_modes() -> None: