Issues

• Base ORF detection on isoforms

  enhancement
  Task

  cfe-lab/CFEIntact#101 · Filter by author Donaim opened on May 29, 2026
  1

• Feature Request: Option to use a custom FASTA file as the alignment reference (e.g., for lab strains like NL4-3)

  enhancement
  Feature

  cfe-lab/CFEIntact#100 · Filter by author sui-ting-chloe-hui opened on May 26, 2026
  4

• Report reverse-complement alignments

  enhancement
  Task

  cfe-lab/CFEIntact#42 · Filter by author Donaim opened on May 16, 2025

• Improve typing in source code

  dependenciesenhancementgood first issuepython
  Task

  cfe-lab/CFEIntact#33 · Filter by author Donaim opened on Feb 3, 2025

• Display more regions in regions.csv

  enhancement
  cfe-lab/CFEIntact#25 · Filter by author Donaim opened on Jul 29, 2024

• Add type annotations to Biopython code

  enhancement
  cfe-lab/CFEIntact#23 · Filter by author Donaim opened on Jul 26, 2024
  1

• Improve ORF coordinates detection

  enhancement
  cfe-lab/CFEIntact#22 · Filter by author Donaim opened on Jul 25, 2024
  2

• Present output in a quality-control manner

  enhancement
  cfe-lab/CFEIntact#20 · Filter by author Donaim opened on May 29, 2024

• Add concordance output statistics

  enhancement
  cfe-lab/CFEIntact#7 · Filter by author Donaim opened on Oct 3, 2023