Issues

• [bug] out of bounds

  PoonLab/OpenRDP#122 · Filter by author DamienFr opened on Sep 9, 2026
  3

• Alignment contains invalid characters

  PoonLab/OpenRDP#121 · Filter by author maxc4-bit opened on Jan 16, 2026
  2

• Creating Test Cases with RDP4.101

  PoonLab/OpenRDP#117 · Filter by author WilliamZekaiWang opened on May 20, 2025

• Lots of branches from old issues that could be deleted

  PoonLab/OpenRDP#115 · Filter by author WilliamZekaiWang opened on May 1, 2025

• Run flake8 (and black) on the code?

  enhancement
  PoonLab/OpenRDP#107 · Filter by author terrycojones opened on Jul 27, 2024
  1

• User request: constrain analysis to one parent sequence

  enhancement
  PoonLab/OpenRDP#94 · Filter by author ArtPoon opened on Jun 10, 2024
  9

  

• Random permutation to generate null distribution

  backburner
  PoonLab/OpenRDP#84 · Filter by author ArtPoon opened on Mar 20, 2024

• Check adjustment of p-values for multiple comparisons

  bug
  PoonLab/OpenRDP#83 · Filter by author ArtPoon opened on Mar 20, 2024

• Excessive text being printed to console

  enhancement
  PoonLab/OpenRDP#69 · Filter by author ArtPoon opened on Oct 10, 2023
  3

• Refining breakpoints with HMM

  backburner
  PoonLab/OpenRDP#56 · Filter by author ArtPoon opened on Mar 29, 2023

• Other metrics to determine which sequence is recombinant

  backburner
  PoonLab/OpenRDP#55 · Filter by author ArtPoon opened on Mar 29, 2023

• Reconciling recombination events

  backburner
  PoonLab/OpenRDP#54 · Filter by author ArtPoon opened on Mar 29, 2023

• DNA_ALPHABET does not include IUPAC symbols

  PoonLab/OpenRDP#46 · Filter by author ArtPoon opened on Feb 8, 2023
  5

  

• Packaging Python script

  enhancement
  PoonLab/OpenRDP#34 · Filter by author traneric opened on Apr 13, 2022
  4