Issues

• [BC-INTEGRATION-04] Publish an immutable integration-ready BuildCompiler release

  MyersResearchGroup/BuildCompiler#115 · Filter by author Gonza10V opened on Jul 16, 2026

• [BC-INTEGRATION-03] Resolve authenticated tutorial SBOL validation failure

  MyersResearchGroup/BuildCompiler#114 · Filter by author Gonza10V opened on Jul 16, 2026

• [BC-INTEGRATION-02] Add JSON-safe plan, result, and artifact DTO serialization

  MyersResearchGroup/BuildCompiler#113 · Filter by author Gonza10V opened on Jul 16, 2026

• [BC-INTEGRATION-01] Implement token-based from_synbiohub on the clean BuildCompiler API

  MyersResearchGroup/BuildCompiler#112 · Filter by author Gonza10V opened on Jul 16, 2026

• [SBS-CONNECT-EPIC-02] Make the clean BuildCompiler API integration-ready

  MyersResearchGroup/BuildCompiler#111 · Filter by author Gonza10V opened on Jul 16, 2026

• [SPRINT-02-12] Validate plating/protocol JSON boundary and optional simulation behavior

  MyersResearchGroup/BuildCompiler#99 · Filter by author Gonza10V opened on May 8, 2026

• [SPRINT-02-11] Harden transformation SBOL output and chaining tests

  MyersResearchGroup/BuildCompiler#98 · Filter by author Gonza10V opened on May 8, 2026

• [SPRINT-02-10] Validate lvl1 Assembly SBOL artifacts and remove default JSON side effects

  MyersResearchGroup/BuildCompiler#97 · Filter by author Gonza10V opened on May 8, 2026

• [SPRINT-02-09] Add inventory-to-lvl1 route contract tests

  MyersResearchGroup/BuildCompiler#96 · Filter by author Gonza10V opened on May 8, 2026

• [SPRINT-02-08] Add optional SynBioHub pull-to-index equivalence tests

  MyersResearchGroup/BuildCompiler#95 · Filter by author Gonza10V opened on May 8, 2026

• [SPRINT-02-07] Add local collection indexing integration tests

  MyersResearchGroup/BuildCompiler#94 · Filter by author Gonza10V opened on May 8, 2026

• [SPRINT-02-06] Add canonical SBOL fixture collections for indexing and assembly tests

  MyersResearchGroup/BuildCompiler#93 · Filter by author Gonza10V opened on May 8, 2026

• [SPRINT-02-05] Consolidate Plasmid model and remove duplicate wrapper logic

  MyersResearchGroup/BuildCompiler#92 · Filter by author Gonza10V opened on May 8, 2026

• [SPRINT-02-04] Add PullPolicy and remove hidden SynBioHub fallback from local mode

  MyersResearchGroup/BuildCompiler#91 · Filter by author Gonza10V opened on May 8, 2026

• [SPRINT-02-03] Add inventory indexing audit report

  MyersResearchGroup/BuildCompiler#90 · Filter by author Gonza10V opened on May 8, 2026

• [SPRINT-02-02] Split collection pulling from SBOL document indexing

  MyersResearchGroup/BuildCompiler#89 · Filter by author Gonza10V opened on May 8, 2026

• [SPRINT-02-01] Add local SBOL document indexing entry point

  MyersResearchGroup/BuildCompiler#88 · Filter by author Gonza10V opened on May 8, 2026

• [SPRINT-02] Indexing, SBOL artifact, and protocol boundary stabilization

  MyersResearchGroup/BuildCompiler#87 · Filter by author Gonza10V opened on May 8, 2026

• Deduplicate composite plasmids when extending indexed_plasmids

  MyersResearchGroup/BuildCompiler#48 · Filter by author doublergreer opened on Apr 27, 2026

• Create Lvl1 TU finder function

  MyersResearchGroup/BuildCompiler#43 · Filter by author doublergreer opened on Apr 6, 2026

• standardize composite output to enable lvl2 computation

  MyersResearchGroup/BuildCompiler#42 · Filter by author doublergreer opened on Apr 2, 2026

• add composite name differentiation to assembly

  MyersResearchGroup/BuildCompiler#41 · Filter by author doublergreer opened on Mar 31, 2026
  

• cut redundant functions from abstract_translator.py and make a dedicated utility function file

  MyersResearchGroup/BuildCompiler#40 · Filter by author Gonza10V opened on Mar 25, 2026

• rewrite old assembly tests so new representation works with CI/CD pipeline

  MyersResearchGroup/BuildCompiler#39 · Filter by author Gonza10V opened on Mar 25, 2026

• add create_implementation functions for REs and Ligases

  MyersResearchGroup/BuildCompiler#38 · Filter by author doublergreer opened on Mar 24, 2026